PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0031s0037.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 166aa MW: 17817.7 Da PI: 4.6172

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0031s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.3	5.9e-16	17	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +Wv+eIr+p++ ++r++lg++ tae+Aa+a++aa+++l+g Kalax.0031s0037.1.p 17 IYRGIR--SRGPKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDAAALALKG 65 69*6..5678****854...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.29E-13	16	74	No hit	No description
Pfam	PF00847	1.4E-9	16	65	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-27	17	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-17	17	73	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.3E-26	17	74	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.401	17	73	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
DQQRARAHSS WKHTHPIYRG IRSRGPKWVS EIREPKKTTR IWLGTYPTAE MAAAAYDAAA 60 LALKGSDAVL NFPECAGAYP APDSLSAADV RAAAEAAAAT RAPSQPINEE VQHGGEYVDE 120 DVILDMPNFL ADMAEGMMVS PPRMRPADDD DDTGEGSSSG LWDHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-12	15	73	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016737007.1	5e-53	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	2e-43	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U8NDA2	1e-51	A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
STRING	POPTR_0003s12120.1	2e-52	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	4e-33	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0031s0037.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]