PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0030s0144.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 427aa    MW: 47368.6 Da    PI: 8.8592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0030s0144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19298348155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aa+a+++a+ +++g
  Kalax.0030s0144.1.p 298 KKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEAAARAYDRAAIEFRG 348
                          59********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32299357IPR001471AP2/ERF domain
PfamPF008471.5E-13299348IPR001471AP2/ERF domain
SMARTSM003807.5E-38299362IPR001471AP2/ERF domain
PROSITE profilePS5103225.646299356IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22299357IPR016177DNA-binding domain
PRINTSPR003671.6E-11300311IPR001471AP2/ERF domain
CDDcd000183.02E-18302356No hitNo description
PRINTSPR003671.6E-11322338IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGAGPTGAAS IAVGSAGRPA MLVLPAPPTG GSLALSKTYV DPFNVNCMLS LNVHMTKIEK  60
KQKLLMEEQL PWQQQNRRDQ IQEHLCLSIR NKVFLVVLSN NTQVMSSSLD DIALREICWS  120
SKYLSLSAAM SSTWLSYDDN IGHNRAPPRV FHYPISLHFQ QPPRALQHLM KIIYVHCLIL  180
QNGPLTMKKL NNNPDIKPFI TNTSVPVSKD EELPALKHVT ASDPPALMTQ NPHSASSSWT  240
SSEHDSIISL TDIGACRRCN FDGCLGCDYF PAEKQSIAID KKRNNEDVGS KRKYRVKKKY  300
RGVRQRPWGK WAAEIRDPRR AARVWLGTFE TAEAAARAYD RAAIEFRGNR AKLNFPMADY  360
GSSSTASGDV QMPTVGRGDG SSTRSEQAFS KKDGEEEDEG SMEAEASGRN SDERIWNNDV  420
ALDQTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24298357161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-21redox responsive transcription factor 1