PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0030s0126.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 302aa MW: 34276.6 Da PI: 7.7963 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5e-32 | 170 | 225 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG e+AtPk+i+++m v+gLt+++vkSHLQkYRl+ Kalax.0030s0126.1.p 170 KQRRCWSPELHQRFVDALKQLGGFEVATPKQIRDIMRVEGLTNDEVKSHLQKYRLH 225 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-17 | 168 | 228 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 169 | 228 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.312 | 169 | 227 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.9E-26 | 170 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-7 | 172 | 223 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MDPGPTHDFL KIAPPVDDPP RRKLQGLADY LAGLEAERRK VEAFERELPL CLGLLNDAVE 60 RFREELRKCR EAVDRSFDKV RGPHSENVDD DRKNWMSSVQ LWNPHPDDSS EFNSSSSNLD 120 LMIGGCFGDG ISLNQLCGEN VRNPGKELIN ESKRQKRIQH QQAQQLVCRK QRRCWSPELH 180 QRFVDALKQL GGFEVATPKQ IRDIMRVEGL TNDEVKSHLQ KYRLHFRKAP STPMPATLNG 240 PTASRDDQLS TRLHSKSHSM YSPQGPLGRS SAMLDEGGDD ENEGHSWRNR VIFRPACMPT 300 C* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-15 | 170 | 223 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-15 | 170 | 223 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-15 | 170 | 223 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-15 | 170 | 223 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-42 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0030s0126.1.p |