PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0030s0093.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 33781.6 Da PI: 7.0696 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++++q G g W+t +++ g+ R++k+c++rw +yl Kalax.0030s0093.1.p 32 RGPWTAEEDELLTKCINQQGEGKWRTLPKRAGLVRCGKSCRLRWMNYL 79 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.7e-15 | 90 | 130 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Kalax.0030s0093.1.p 90 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 130 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.207 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-29 | 29 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.02E-11 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 24.341 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 84 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 87 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-14 | 90 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-11 | 90 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MRNPSSSASS SPANEKKKSS RNSSGKMVGL KRGPWTAEED ELLTKCINQQ GEGKWRTLPK 60 RAGLVRCGKS CRLRWMNYLH PSVKRGQIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN 120 EIKNYWNTHL SKKLISQGID PKTHKPLLET TCTAAAATKN PKIKSVVAAK DGKNSDSDIS 180 GSSKIVTTTT PTSSGQNPNP YRHRHSGSVV DDGLEEDQMV VGHGGYGNNA HETDGAGHHY 240 FHQSDLDLED GVGGGYHVNL QLSPQDLSIE DVHHHGGGDG MINCEGMVEE DDGVLTSFLD 300 SLINDDMFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 30 | 134 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028759636.1 | 3e-83 | transcription repressor MYB5-like | ||||
TrEMBL | A0A411PZP7 | 5e-85 | A0A411PZP7_CITLI; R2R3-MYB family transcription factor | ||||
STRING | XP_006488922.1 | 1e-81 | (Citrus sinensis) | ||||
STRING | cassava4.1_011594m | 1e-81 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-71 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0030s0093.1.p |