PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0029s0124.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31094.2 Da    PI: 7.5093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0029s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-18125179256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++t++q   Lee F+++++++ ++++ LAk+lgL  rqV vWFqNrRa+ k
  Kalax.0029s0124.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTK 179
                          788899***********************************************98 PP
2HD-ZIP_I/II114.37.4e-37125214191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+++q+ lLEe+F+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E ++e++kr++++l+++ +rL+kev+eLr +
  Kalax.0029s0124.1.p 125 RKKLRLTRDQSLLLEETFKEHNTLNPRQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEAECEYMKRNCESLMDRVRRLQKEVNELR-A 213
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.0029s0124.1.p 214 L 214
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-18107179IPR009057Homeodomain-like
SuperFamilySSF466893.01E-18111182IPR009057Homeodomain-like
PROSITE profilePS5007117.41121181IPR001356Homeobox domain
SMARTSM003897.0E-15123185IPR001356Homeobox domain
PfamPF000461.3E-15125179IPR001356Homeobox domain
CDDcd000862.29E-15125182No hitNo description
PRINTSPR000311.1E-5152161IPR000047Helix-turn-helix motif
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5161177IPR000047Helix-turn-helix motif
SMARTSM003408.0E-18181224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSAATQRKVI EMSSSDFGLG DLDLNLSLHV TTEPLTQELQ PLEPDSFSPI PVLSLAPDLS  60
PGQKVVDLTR SPTSGDQVEE GGSQNSTLST LSLKRTHPEE ELHQVPDRES PPRGGSDEED  120
GENARKKLRL TRDQSLLLEE TFKEHNTLNP RQKQALAKQL GLRARQVEVW FQNRRARTKL  180
KQTEAECEYM KRNCESLMDR VRRLQKEVNE LRALKLAPQF YMQMPPATTL TLCPSCERVG  240
IPTPAGGPVN KSRAGVERGI GPVSGGPWAS GPGQMNHRPF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839633.12e-83PREDICTED: homeobox-leucine zipper protein HAT4-like
TrEMBLA0A2I4G6W74e-82A0A2I4G6W7_JUGRE; homeobox-leucine zipper protein HAT4-like
STRINGAquca_067_00037.19e-80(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-71homeobox protein 2