PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0028s0016.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 287aa MW: 31147.9 Da PI: 6.4232 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.3 | 3.6e-33 | 16 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+vk Lt++hvkSHLQkYRl Kalax.0028s0016.2.p 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRAMGVKELTIYHVKSHLQKYRL 70 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.882 | 13 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 14 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-17 | 14 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-25 | 16 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 18 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-23 | 102 | 148 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDPLGGGNNS PSVSSKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRA MGVKELTIYH 60 VKSHLQKYRL AKYLPDSSSD GNKVDMKESG DPHSVLEDSS GMQITEALKL QMEVQKRLHE 120 QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS GVLAGSSASD HASGALDCDK IDPPTPASTS 180 ELPLQEKSPK DRTVKSFSLD ESLSSPLTPD SGCNINSPLS SPCNERSAKK QRVNMDAPSA 240 MPGMGISHIL ESSLSSSYQQ PGVSSAHEQF DLPSGSSFCT DNTLPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-22 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-22 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-22 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-22 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449962.1 | 1e-129 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-113 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | V4UB20 | 1e-128 | V4UB20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449962.1 | 1e-128 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-91 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0028s0016.2.p |