PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0027s0136.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 210aa    MW: 22476.9 Da    PI: 6.1215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0027s0136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-204897255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++aa+ kl+g
  Kalax.0027s0136.1.p 48 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDAAAIKLYG 97
                         69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-2147107No hitNo description
SuperFamilySSF541711.77E-2248107IPR016177DNA-binding domain
PfamPF008472.1E-144897IPR001471AP2/ERF domain
PROSITE profilePS5103222.78748105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3148107IPR001471AP2/ERF domain
SMARTSM003802.4E-3548111IPR001471AP2/ERF domain
PRINTSPR003673.1E-104960IPR001471AP2/ERF domain
PRINTSPR003673.1E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSYSSSSS SSSSEKLARG SPGRKPGQGT SRKGCMRGKG GPENAACTYK GVRQRTWGKW  60
VAEIREPNRG ARLWLGTFDT AREAALAYDA AAIKLYGSDA KLNLPDSVPT PAANHHSPAP  120
THNVSYNYGF ATGSNDAVSD AEKQRWAEFD FDMNVAPGAT KAEDIVDEEL WAEAAKTLEF  180
PIMEGPGIFG NQCVDNNGLE VVMHSPWCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1949108666ATERF1
3gcc_A8e-1949108666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081437e-40AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046237e-40AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054117e-40AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149647e-40AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393757e-40AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126167e-40CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686999.18e-58PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-48DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2N9IGX51e-58A0A2N9IGX5_FAGSY; Uncharacterized protein
STRINGGorai.009G271400.19e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]