PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0027s0087.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 582aa    MW: 63407.6 Da    PI: 7.1891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0027s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3105.5e-952165813374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L+e+A a+++g +e a ++++r+ + ++p+g+p qRla y+  AL+++l++    +  +  + +    +sse+  +++l+++ s ++k
  Kalax.0027s0087.1.p 216 QSLIEAAAAIADGRQESAAEIVTRVAQSSNPRGTPEQRLAYYMSSALKSKLTS----VGGQNLSDQI---RSSEHYESVQLLYQHSSCFK 298
                          78**************************************************9....3322223333...38899999************ PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          +++l+aN aI ea++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+    +  e+ +  +e+L+++ +++gvpfe ++l
  Kalax.0027s0087.1.p 299 LGFLAANLAIIEATADVKSLHVVDFDMGDGTQYHNLLQLLSLRKSGKPtSVRITAVDV---SGLERWRIAKEKLSQLSDRVGVPFELKTL 385
                          ********************************************77776********9...579999**********************5 PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                             ++ d++ e+L  +p+E++aVnl+++l +l+desvs+e++rde+L+ vk+l+++vv+vve+++++n++++l+r++e++++y al++s+
  Kalax.0027s0087.1.p 386 -RLKVGDVSRESLCSSPDEVVAVNLAYSLSKLPDESVSTENQRDELLRRVKGLQARVVTVVEEDMNCNTAPLLTRVAECCSFYGALLESM 474
                          .889************************************************************************************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve......ees 355
                          +++++re+ eri vE+  lgr+  n va eg +r++r+e ++kWr+r+++aGF++ p+s++++++ +  ++  +  g rv       e++
  Kalax.0027s0087.1.p 475 DSGMGREEAERIRVEEG-LGRSMGNSVALEGGDRVQRCEVFGKWRARMGMAGFEAKPVSQNVVDSLSWRINSNS-GGTRVGcplfvkEDN 562
                          *****************.**************************************************999998.45554444444499* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          g +++gW++r L+++SaWr
  Kalax.0027s0087.1.p 563 GGVCFGWMGRILTVTSAWR 581
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.19188556IPR005202Transcription factor GRAS
PfamPF035141.9E-92216581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSSGLPGGLP SSFSAAASSS SAGRPISNNG LIQQQQPVMY RLPQLLPENG SLGKRTLAEF  60
LNQPFQHQQG TAAEFSMRPV KPRIYHNPSP ISPQSPIDLL PEIGAAFVGR CPSRYQNFGI  120
NNLSYHHNRV AVAETDKKMM NRLHELEKQL LGDDNDDSVS VITGNEWSDT IQNLIATNEK  180
PSPPLQLQQQ VYTSSPTSSS SSCSSYTVAS PICPKQSLIE AAAAIADGRQ ESAAEIVTRV  240
AQSSNPRGTP EQRLAYYMSS ALKSKLTSVG GQNLSDQIRS SEHYESVQLL YQHSSCFKLG  300
FLAANLAIIE ATADVKSLHV VDFDMGDGTQ YHNLLQLLSL RKSGKPTSVR ITAVDVSGLE  360
RWRIAKEKLS QLSDRVGVPF ELKTLRLKVG DVSRESLCSS PDEVVAVNLA YSLSKLPDES  420
VSTENQRDEL LRRVKGLQAR VVTVVEEDMN CNTAPLLTRV AECCSFYGAL LESMDSGMGR  480
EEAERIRVEE GLGRSMGNSV ALEGGDRVQR CEVFGKWRAR MGMAGFEAKP VSQNVVDSLS  540
WRINSNSGGT RVGCPLFVKE DNGGVCFGWM GRILTVTSAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-432165816375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-168scarecrow-like protein 8
SwissprotQ9FYR71e-133SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1R3IN331e-167A0A1R3IN33_COCAP; Transcription factor GRAS
STRINGXP_002513664.11e-168(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8