PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0027s0063.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23298.7 Da PI: 6.8122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.7e-10 | 11 | 57 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT Ed+l+ ++ +++ +W++Ia++++ ++ +q+++++ + Kalax.0027s0063.2.p 11 SWTRSEDKLFEQLLVKYPEAepeRWEKIASRLQ-FKSTEQVRDHYEEL 57 7*****************88*************.99*********766 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.2e-14 | 111 | 155 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Kalax.0027s0063.2.p 111 PWTEEEHRLFLIGLQKYGKGDWRSISRQVVITRTPTQVASHAQKY 155 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.716 | 4 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-11 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-7 | 8 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-11 | 10 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-9 | 11 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.89E-7 | 16 | 58 | No hit | No description |
PROSITE profile | PS51294 | 20.555 | 104 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.14E-17 | 106 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-17 | 107 | 159 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-11 | 108 | 158 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-12 | 108 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.03E-9 | 111 | 156 | No hit | No description |
Pfam | PF00249 | 7.4E-13 | 111 | 155 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MFPSPSSTSS SWTRSEDKLF EQLLVKYPEA EPERWEKIAS RLQFKSTEQV RDHYEELLHD 60 VSQIDAGRIE LPSYVDDVVD EEDGSWDSDS KRISFGRKSG KSDAERKKGT PWTEEEHRLF 120 LIGLQKYGKG DWRSISRQVV ITRTPTQVAS HAQKYFLRQN SVKKERKRSS IHDITTVDKQ 180 QRNDIVGEDT SFGYHNFGVN G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212063.1 | 5e-80 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-56 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A151TQ52 | 1e-78 | A0A151TQ52_CAJCA; Myb-like protein J | ||||
TrEMBL | A0A2H5PNP1 | 1e-77 | A0A2H5PNP1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U9T9 | 1e-77 | V4U9T9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485458.1 | 6e-79 | (Citrus sinensis) | ||||
STRING | XP_010423540.1 | 5e-79 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-72 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0027s0063.2.p |
Publications ? help Back to Top | |||
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