PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0026s0199.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 229aa MW: 25344.6 Da PI: 9.5568 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 48 | 102 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v gLt++hvkSHLQkYRl Kalax.0026s0199.3.p 48 KQRLRWTSDLHDRFVDAIAQLGGPDRATPKGVLRVMGVSGLTIYHVKSHLQKYRL 102 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.812 | 45 | 105 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-32 | 46 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-17 | 47 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-26 | 48 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 50 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-24 | 135 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MYQAKKFSTT NLIPHKAQGA ERVAIVTTPD ESTVKGTASS PPTSGNSKQR LRWTSDLHDR 60 FVDAIAQLGG PDRATPKGVL RVMGVSGLTI YHVKSHLQKY RLVKYLPESS ADGSKDDKKG 120 SGDSLSSLDS PPGLQINEAL RMQMEVQRRL HEQLEVQRQL QMRIEAQGKY LQKIIEEQQK 180 LGSTIKASEL EALDEEQPTS GAGGQSGPRK RLRIDVEEQS KVWDREDP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 48 | 105 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017243654.1 | 1e-102 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Swissprot | Q9SJW0 | 8e-77 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2G5EC04 | 6e-99 | A0A2G5EC04_AQUCA; Uncharacterized protein | ||||
STRING | XP_009345372.1 | 1e-101 | (Pyrus x bretschneideri) | ||||
STRING | XP_009347649.1 | 1e-101 | (Pyrus x bretschneideri) | ||||
STRING | XP_009347650.1 | 1e-101 | (Pyrus x bretschneideri) | ||||
STRING | XP_008392505.1 | 1e-101 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 7e-67 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0026s0199.3.p |