PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0026s0074.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 454aa    MW: 50846.6 Da    PI: 6.2439
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0026s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.63.7e-140474501374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v++g+le a+ +L ++s++aspdgd+mqR+a+yfteALa+r+++s+++ly+al++++       ee+ ++klf e++P+
  Kalax.0026s0074.1.p  47 LIHLLLTCANHVANGSLESANVALDQISQIASPDGDTMQRIASYFTEALANRILKSWPGLYRALNSTRML--MAHEEILVQKLFLELFPF 134
                          689*************************************************************988886..59999************* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+++ +aNqaI+ea+ege+++H+iD+   +++QW+aLlqaL+ Rpegpp+lRiTg+++    +k  l ++++rL+  Ae+l++pf+fn+
  Kalax.0026s0074.1.p 135 LKIAYTVANQAIMEAMEGEKMIHVIDLCSAEPAQWVALLQALSVRPEGPPHLRITGIHQ----QKAVLDQMAQRLNAEAERLDIPFQFNP 220
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.....................................desvsleserdevLklvks 233
                           v+++le+l++++Lrvk+gEala++++lqlh+ll                                      +s +l+s+ d++L  +++
  Kalax.0026s0074.1.p 221 -VVSNLECLDFDRLRVKTGEALAISSILQLHKLLswddetvrlrlldkppnynhgtfgellekdtgispdsTSSSPLPSNMDSFLMELRN 309
                          .799*****************************************************************99888899999********** PP

                 GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                          l Pkv+vv+eq+++hn++s++er++eal+yy+alfd+le++++r+s er k+E+ l+g+ei+n++aceg+er+erhe+l kW +r+++aG
  Kalax.0026s0074.1.p 310 LLPKVMVVAEQDSNHNGSSLMERLTEALYYYAALFDCLESTVSRASLERLKIEKILFGEEIKNIIACEGRERKERHEKLCKWVRRIGAAG 399
                          ****************************************************************************************** PP

                 GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          F++vpls  a+  a++ll+ ++ dgy++++e+gs+vl+W+dr+L+svSaWr
  Kalax.0026s0074.1.p 400 FGAVPLSCLAMLLARRLLQGYGCDGYQIKDENGSIVLCWQDRALFSVSAWR 450
                          **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.66121430IPR005202Transcription factor GRAS
PfamPF035141.3E-13747450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAPTVQEDGS SSVTSSPLHF FSMMSLSPGS AHPWLKELKS EERGLYLIHL LLTCANHVAN  60
GSLESANVAL DQISQIASPD GDTMQRIASY FTEALANRIL KSWPGLYRAL NSTRMLMAHE  120
EILVQKLFLE LFPFLKIAYT VANQAIMEAM EGEKMIHVID LCSAEPAQWV ALLQALSVRP  180
EGPPHLRITG IHQQKAVLDQ MAQRLNAEAE RLDIPFQFNP VVSNLECLDF DRLRVKTGEA  240
LAISSILQLH KLLSWDDETV RLRLLDKPPN YNHGTFGELL EKDTGISPDS TSSSPLPSNM  300
DSFLMELRNL LPKVMVVAEQ DSNHNGSSLM ERLTEALYYY AALFDCLEST VSRASLERLK  360
IEKILFGEEI KNIIACEGRE RKERHEKLCK WVRRIGAAGF GAVPLSCLAM LLARRLLQGY  420
GCDGYQIKDE NGSIVLCWQD RALFSVSAWR CRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-69354527381Protein SCARECROW
5b3h_A5e-69354526380Protein SCARECROW
5b3h_D5e-69354526380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_84.120.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]