PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0026s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 228aa    MW: 25231.2 Da    PI: 8.7745
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0026s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.4e-33144202159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  Kalax.0026s0020.1.p 144 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEGVVITTYEGVHSHP 202
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33129202IPR003657WRKY domain
SuperFamilySSF1182901.96E-29136203IPR003657WRKY domain
PROSITE profilePS5081130.01139204IPR003657WRKY domain
SMARTSM007742.2E-39144203IPR003657WRKY domain
PfamPF031068.1E-27145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFMAFDQISN SASSHFSLAS IMPMCSSSLR DSSQLFQSQK TTSLLAGLME MQQQQGGVMK  60
RLSVEDIADG DKDSSNNICY ENEGGGCIDD QSCNSAGMKQ QLEHHQKPNT AQSKGGGGGG  120
GAAAEKKIKK HRYAFQTRSH VDILDDGYRW RKYGQKAVKN NKFPRSYYRC THQGCNVKKQ  180
VQRLSKDEGV VITTYEGVHS HPIQKSTDNF EHILTQMQIY SNTSSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27134201774Probable WRKY transcription factor 4
2lex_A2e-27134201774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222197.11e-66PREDICTED: probable WRKY transcription factor 75
TrEMBLM5XPE94e-64M5XPE9_PRUPE; Uncharacterized protein
STRINGXP_008222197.15e-66(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-58WRKY DNA-binding protein 75