PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0026s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 954aa MW: 106399 Da PI: 6.3311

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0026s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	158.7	1.1e-49	12	127	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwlk+ e++ i++n + +l +e+ ++p+sgsl+Lyn++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+een Kalax.0026s0015.1.p 12 REaQARWLKPAEVYYIIQNCDDSHLLSESVKKPPSGSLFLYNKRVLRNFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEEN 101 56599*********************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 p+fqrr++w+L e+ +ivlv+yl+v Kalax.0026s0015.1.p 102 PSFQRRSFWMLTGERGHIVLVQYLDV 127 *********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	68.632	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.9E-63	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-43	13	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.0E-9	382	469	IPR013783	Immunoglobulin-like fold
CDD	cd00603	0.0033	383	467	No hit	No description
SuperFamily	SSF81296	6.07E-18	383	467	IPR014756	Immunoglobulin E-set
Pfam	PF01833	8.8E-7	383	455	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	4.1E-16	580	675	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.326	581	673	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.64E-17	583	675	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.21E-16	586	673	No hit	No description
Pfam	PF12796	5.0E-8	598	674	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.045	614	646	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	614	649	IPR002110	Ankyrin repeat
SMART	SM00248	1300	653	682	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.25E-8	729	836	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	731	753	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	732	761	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.12	788	810	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	789	818	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0073	791	809	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	811	833	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.828	813	837	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.7E-5	814	833	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MQSEFDISDL VREAQARWLK PAEVYYIIQN CDDSHLLSES VKKPPSGSLF LYNKRVLRNF 60 RKDGHNWRKK RDGRTVGEAH ERLKVGNVEA LNCYYAHGEE NPSFQRRSFW MLTGERGHIV 120 LVQYLDVANQ SPVSVSQPSH LFSSPSSHSP SSSSGTYQES VSFGGGYESH INLPSPVSSE 180 ICSEVGIDNS MLEYYNSLRN ASETMTVSND SNVKVNEALR RIEEQLSLND ENVNEINSIR 240 SPDGKLNISN FEDFPMEIAY QGQPDDFLDG SEYAARDRGC AGVKNGFNSV MHEAGDSRMS 300 QQQTSSHKEP SGDRDSVSWT DMVDFGEGEH LSPNLPEVFS PSTNRFEGPP FSSFTSSQQR 360 DLGYSFDTDQ TTIPPQVQKQ KFTILDVSPE WGYSFETTKV IIVGSFLCHP SDHAWTCMFG 420 DFEVPIQIIQ EGVILCEAPP NPSGKVTICI TSANHEPCSE VREFEYRNKT SSCSQCSASK 480 EETKMSSEEL LLLVRLAQML LCDTLGQRGD SKEQGNALSE KGNFNEDSWS LIVESLLVGS 540 GTSSGTMKWL LEEFLKDKLV KWLSSKTHNR LGESSCLLSR KEQGVIHMIA GLGYEWALTP 600 IISSGVSINF RDINGWTALH WAARFGREKM VACLIASGAL AGAVTDPNAQ DPTGKTPASI 660 AAINGHKGLA GYLSEVSLTS HLSSLKLQES EFSKGLAVLE AEHTINRISE NNMHTSEDQL 720 SLKDTLTAVR NAASAAARIQ SAYRAHSFRK RQQKNAFNTV SIDDYGFSSG DLQGLPSVSK 780 IAFRNTRDHN SAALSIQKKY RGYKGRKEFL DFRQKVVKIQ AHVRGHQTRK NYKVCWAVGI 840 LEKIVLRWRR KGVGLRGFKP EPETIDESDE EDFAKVFRKK KVEAAVDEAV SRVLSMVESS 900 EARQQYRRML ERYRQAKAQL GNAANEEASG SLTGMSNMED DQTFQYSFSL DHY*

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MQSEFDISDL VREAQARWLK PAEVYYIIQN CDDSHLLSES VKKPPSGSLF LYNKRVLRNF  60
RKDGHNWRKK RDGRTVGEAH ERLKVGNVEA LNCYYAHGEE NPSFQRRSFW MLTGERGHIV  120
LVQYLDVANQ SPVSVSQPSH LFSSPSSHSP SSSSGTYQES VSFGGGYESH INLPSPVSSE  180
ICSEVGIDNS MLEYYNSLRN ASETMTVSND SNVKVNEALR RIEEQLSLND ENVNEINSIR  240
SPDGKLNISN FEDFPMEIAY QGQPDDFLDG SEYAARDRGC AGVKNGFNSV MHEAGDSRMS  300
QQQTSSHKEP SGDRDSVSWT DMVDFGEGEH LSPNLPEVFS PSTNRFEGPP FSSFTSSQQR  360
DLGYSFDTDQ TTIPPQVQKQ KFTILDVSPE WGYSFETTKV IIVGSFLCHP SDHAWTCMFG  420
DFEVPIQIIQ EGVILCEAPP NPSGKVTICI TSANHEPCSE VREFEYRNKT SSCSQCSASK  480
EETKMSSEEL LLLVRLAQML LCDTLGQRGD SKEQGNALSE KGNFNEDSWS LIVESLLVGS  540
GTSSGTMKWL LEEFLKDKLV KWLSSKTHNR LGESSCLLSR KEQGVIHMIA GLGYEWALTP  600
IISSGVSINF RDINGWTALH WAARFGREKM VACLIASGAL AGAVTDPNAQ DPTGKTPASI  660
AAINGHKGLA GYLSEVSLTS HLSSLKLQES EFSKGLAVLE AEHTINRISE NNMHTSEDQL  720
SLKDTLTAVR NAASAAARIQ SAYRAHSFRK RQQKNAFNTV SIDDYGFSSG DLQGLPSVSK  780
IAFRNTRDHN SAALSIQKKY RGYKGRKEFL DFRQKVVKIQ AHVRGHQTRK NYKVCWAVGI  840
LEKIVLRWRR KGVGLRGFKP EPETIDESDE EDFAKVFRKK KVEAAVDEAV SRVLSMVESS  900
EARQQYRRML ERYRQAKAQL GNAANEEASG SLTGMSNMED DQTFQYSFSL DHY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725125.1	0.0	calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	D7TB03	0.0	D7TB03_VITVI; Uncharacterized protein
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Kalax.0026s0015.1.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]