PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0025s0135.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 391aa    MW: 44010.9 Da    PI: 4.9616
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0025s0135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.21.9e-36106204197
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                          klfqrlw++eDei lLqG++++++++g+  + + d++ fy+++k++++++++k+qlveK+rrLKkK+++  +++  gke++f+++hdq +
  Kalax.0025s0135.1.p 106 KLFQRLWTDEDEIELLQGFLEYTNQRGAsgQHHYDTTLFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNILNRITAGKEVAFKSAHDQAT 195
                          579*************************755566******************************************************** PP

               DUF573  89 felskkiWg 97 
                          fe+s+kiW 
  Kalax.0025s0135.1.p 196 FEISRKIWA 204
                          ********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.2E-34108203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASDAGRRNS PLSNNDEEGD CFRKEDGDLT LSLRNNHPKG TEFQVNKDEA LAQPIEDDDD  60
IISDPTTSFN TTTELTLGDA RQDEGAVGFR TVQSQQQQQP VDESRKLFQR LWTDEDEIEL  120
LQGFLEYTNQ RGASGQHHYD TTLFYDQIKS KLQLEFNKNQ LVEKLRRLKK KYRNILNRIT  180
AGKEVAFKSA HDQATFEISR KIWANYSANI GASGGLDDED ANININLSPN PNYNFGTYSN  240
NNSGNYSCNR TDLMADERKP VKSRKRLRMK VEDHRDSDER VLMPNSGAPR LGAISCVIEE  300
TVKSCVSPLF KDIMDTAVNG SCGARGFGIE TMMSPLPLSF GNSGNMMGGG AMDEKWRRQQ  360
ILELEVYSRR LELVQDEIKL QLQELRSAGS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276425.11e-99PREDICTED: probable transcription factor At3g04930
SwissprotF4K5T44e-79STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A438GP893e-98A0A438GP89_VITVI; Putative transcription factor
STRINGXP_009591277.17e-95(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-73DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]