PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0025s0067.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HRT-like

Protein Properties

Length: 400aa MW: 45547.2 Da PI: 10.0222

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0025s0067.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.8	1.8e-18	287	317	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGviledG++C++ Pv+ RKRC+eHKG+Ri Kalax.0025s0067.1.p 287 ICGVILEDGTPCRKLPVPTRKRCQEHKGRRI 317 8*****************************7 PP
2	HRT-like	42.6	1e-13	356	385	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 C v l+dG C+rqP gRKRC+eHKGm++ Kalax.0025s0067.1.p 356 CAVELGDGKKCSRQPNVGRKRCQEHKGMKV 385 99**************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MRESGGAVRL RREDCSRTKH DSVFSRWQIL IGPSDWEDHS LGKEGATRYR IHNLPKGFEP 60 GVYELGIAVS HSGLGRDIRK LDPTRIVVVY LGQAGNVRSR LQSYGQSGSH LVQKNPISKS 120 NCHWDDNIQN GSGLFDDIFS RGYPIVFRWA PMASKKEAVE TEARLLEKFD YAWNKEYNNA 180 RRPDDIYKKL DKVAASTIWF SKITRILQKK VGIRIKSSNH HPIRQDNQPK SRRHNHLFSG 240 VLNFSRSRPR YNLGNPDTGD SSCELNCYYE PETGDMENSP GKGGLQICGV ILEDGTPCRK 300 LPVPTRKRCQ EHKGRRIHVM YNAIREENIA STIREEKNNA NVEHNTQNNQ DQRSACAVEL 360 GDGKKCSRQP NVGRKRCQEH KGMKVNSLVT KQDKFNNSY*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MRESGGAVRL RREDCSRTKH DSVFSRWQIL IGPSDWEDHS LGKEGATRYR IHNLPKGFEP  60
GVYELGIAVS HSGLGRDIRK LDPTRIVVVY LGQAGNVRSR LQSYGQSGSH LVQKNPISKS  120
NCHWDDNIQN GSGLFDDIFS RGYPIVFRWA PMASKKEAVE TEARLLEKFD YAWNKEYNNA  180
RRPDDIYKKL DKVAASTIWF SKITRILQKK VGIRIKSSNH HPIRQDNQPK SRRHNHLFSG  240
VLNFSRSRPR YNLGNPDTGD SSCELNCYYE PETGDMENSP GKGGLQICGV ILEDGTPCRK  300
LPVPTRKRCQ EHKGRRIHVM YNAIREENIA STIREEKNNA NVEHNTQNNQ DQRSACAVEL  360
GDGKKCSRQP NVGRKRCQEH KGMKVNSLVT KQDKFNNSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907781.1	1e-115	LOW QUALITY PROTEIN: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1Q3BK10	1e-112	A0A1Q3BK10_CEPFO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-84	effector of transcription2

Link Out ? help Back to Top
Phytozome	Kalax.0025s0067.1.p