PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0025s0027.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 161aa MW: 17936.4 Da PI: 7.9071 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 94.4 | 2.7e-29 | 20 | 134 | 3 | 112 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....lleelkveeenlksnve 87 + sss+q+Cyv+C+fC+t+lavsvPs slfk+vtvrCGhCt+llsvn++ + +++++h + ++++ l+eel v ++ ++ Kalax.0025s0027.2.p 20 HSSSSHQLCYVHCDFCDTVLAVSVPSCSLFKTVTVRCGHCTNLLSVNMRALLvTPQPSSNHQYHPIHNPppslLQEELYVVNTVMNNSAA 109 67899****************************************999876625566777655555544677666666666666666666 PP YABBY 88 keesastsvsseklsenedeevprv 112 +e+ ++++++++++++ + + p+ Kalax.0025s0027.2.p 110 AESGQEREQEHHRIPTMMQIQQPKR 134 6555555555555544444333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-28 | 23 | 144 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCDFCDTVLA VSVPSCSLFK TVTVRCGHCT 60 NLLSVNMRAL LVTPQPSSNH QYHPIHNPPP SLLQEELYVV NTVMNNSAAA ESGQEREQEH 120 HRIPTMMQIQ QPKRVDEMLN PFSKQKTSLF ASINKRKIIL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020411971.1 | 6e-30 | axial regulator YABBY 1 isoform X1 | ||||
TrEMBL | A0A251QFK4 | 2e-29 | A0A251QFK4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232594.1 | 2e-29 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-24 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0025s0027.2.p |