PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0025s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 201aa MW: 22675.8 Da PI: 9.1018 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 225.4 | 1.5e-69 | 20 | 182 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekees 91 + sss+q+Cyv+C+fC+t+lavsvPs slfk+vtvrCGhCt+llsvn++ + +++++ ++ e +e+++e++ + ++++ ++ Kalax.0025s0027.1.p 20 HSSSSHQLCYVHCDFCDTVLAVSVPSCSLFKTVTVRCGHCTNLLSVNMRALLvTPQPSSN---HHAAAESGQEREQEHHRIPTMMQIQQP 106 57899****************************************998766513334444...455555666666666666666666666 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ + +s++ +++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hreafsaaaknWa+fP+ihfgl Kalax.0025s0027.1.p 107 KRVDEMLNPFSKQ---KTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHREAFSAAAKNWAYFPHIHFGL 182 6555555555554...44445679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.4E-68 | 23 | 182 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.63E-7 | 125 | 175 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCDFCDTVLA VSVPSCSLFK TVTVRCGHCT 60 NLLSVNMRAL LVTPQPSSNH HAAAESGQER EQEHHRIPTM MQIQQPKRVD EMLNPFSKQK 120 TSLFASINKP PEKRQRVPSV YNRFIREEIQ RIKAGNPDIT HREAFSAAAK NWAYFPHIHF 180 GLMPEELHQP VTKKPNLLSR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113007.1 | 5e-71 | axial regulator YABBY 1-like | ||||
Refseq | XP_027160434.1 | 5e-71 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 4e-57 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A1Q3BV98 | 6e-69 | A0A1Q3BV98_CEPFO; YABBY domain-containing protein | ||||
TrEMBL | Q84LC5 | 8e-69 | Q84LC5_CHRMO; YABBY transcription factor CDM51 | ||||
STRING | XP_006490878.1 | 1e-68 | (Citrus sinensis) | ||||
STRING | XP_006445302.1 | 1e-68 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-59 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0025s0027.1.p |