PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0024s0151.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 359aa    MW: 39526.8 Da    PI: 9.9774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0024s0151.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31290347359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+vers e+p+++++tYegeHnh+
  Kalax.0024s0151.2.p 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrSCPARKHVERSLEEPTMLIVTYEGEHNHP 347
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.1E-15242286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-32276348IPR003657WRKY domain
PROSITE profilePS5081129.757283349IPR003657WRKY domain
SuperFamilySSF1182901.7E-26286348IPR003657WRKY domain
SMARTSM007742.3E-37288348IPR003657WRKY domain
PfamPF031069.8E-27290347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEGVEGANRA AVESCNKVLN LLSHHPPAPQ DQIPCRNLMV ETGEAVGRFR KVVSLLGRTV  60
GHARARMSKN LPTPEVPLMK EFESSQNAKV DHQAVSFLSL SSNLGENVKQ ESGPSVTRSV  120
VCSENPSLSL EIGLSCNNNQ PAQLGEPQQI TSPQRHHHQL LLQHQLMKHR FLQQQQAEVM  180
FSKSSSGMSL NFESSSCTPT MSSNRSFMSS LSMDGSVANA NGGAFQYFGA SRSLDHNLLL  240
QKKRCSGRGE SGSLKCGSSR CHCLKKRKHR VRRSIKVPAI SNKLADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRSC PARKHVERSL EEPTMLIVTY EGEHNHPRAQ TQTGDSGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20281346771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306823.11e-133probable WRKY transcription factor 21
RefseqXP_024457974.11e-133probable WRKY transcription factor 21
SwissprotO043361e-102WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9H8I21e-132B9H8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24100.11e-132(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-78WRKY DNA-binding protein 21