PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0024s0143.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 214aa MW: 23244.9 Da PI: 5.4861

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0024s0143.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.3e-18	79	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g Kalax.0024s0143.1.p 79 SSYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAETAALAYDQAAFAIRG 130 67******.******44465..**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.35E-22	79	139	IPR016177	DNA-binding domain
CDD	cd00018	7.89E-30	79	139	No hit	No description
Pfam	PF00847	9.4E-13	79	130	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-36	80	144	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-30	80	139	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.919	80	138	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-13	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-13	120	140	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
SLLDLDSSAS TSSPSSVSNE PGCWIPDERE ITSASKQGKS RKREGKGATL APKRENPTDE 60 CEEDTVNPAS KQKLKSGKSS YRGVRKRPWG KFAAEIRDST RNGVRVWLGT FDSAETAALA 120 YDQAAFAIRG STAVLNFPEE IVKHSLEGMI RIDSDDCDDG CSPVLALKKK HSTKRRSMSS 180 AKPVSKDEEE ESVVVVLQDL GSEYLEELLT SSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-27	81	141	15	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251362.1	6e-55	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	1e-54	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A2R6QSC4	5e-55	A0A2R6QSC4_ACTCH; Ethylene-responsive transcription factor 1B like
STRING	Gorai.004G220800.1	5e-53	(Gossypium raimondii)
STRING	PGSC0003DMT400026627	4e-53	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	2e-49	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Kalax.0024s0143.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]