PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0024s0098.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1297aa    MW: 143132 Da    PI: 7.5719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0024s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-0910531095246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding    2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                           ++WT +E e ++d  +++G++ +++Ia+++  ++t  +c+++++k
  Kalax.0024s0098.1.p 1053 NPWTSDEKETFLDKLALFGKD-FRKIASYLD-HKTIADCVEFYYK 1095
                           79*****************99.*********.***********98 PP
2Myb_DNA-binding25.92.3e-0812121254347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                            WT eE   l++avk +G++ ++ +++++  +R + +ck ++ k+
  Kalax.0024s0098.1.p 1212 DWTDEEKHMLLQAVKFYGSD-FEMVSKYVK-TRYRDECKAFYSKV 1254
                           6*******************.********9.**********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1310381098IPR009057Homeodomain-like
PROSITE profilePS5129314.90610501101IPR017884SANT domain
SMARTSM007171.2E-810511099IPR001005SANT/Myb domain
PfamPF002494.9E-710531095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-410541096IPR009057Homeodomain-like
PROSITE profilePS512931112081259IPR017884SANT domain
SMARTSM007171.3E-612091257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-612121257IPR009057Homeodomain-like
PfamPF002496.0E-712121254IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-1012121259IPR009057Homeodomain-like
CDDcd001673.70E-512131255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1297 aa     Download sequence    Send to blast
MPFPEPVPWD RKEIYRERRP VKSESLGSSP AVSRWRDSSS FSYRADGPRE FYRRGSPDYR  60
RPPGRGRQQG DWHMFPEEPG YGYMPSRSCE RMIEDRSYWP SASRVDGRYR SGKDYYKFRG  120
YQKDWEGHNW QQNFSSPSIS AERPINSSPI FFGGKPSNGF SDIPFERRRN GMFPGFGADR  180
HFNAAPVISG GRQSNGFSGT VNEKARNGFS PRNSSERHIT VSPAVSGDKT CHGFSSAPVE  240
KTRNEYSGAP VVKSHNRFSP SIASARPMSL SSSVSGDKPS DGSSCSLVVT LQNGVSPCTT  300
TDRSNNMPPV VSKPCLKFSD AVVQEAQDGF SDAPTEKAHE GFSPCIVAER SKKSSPSISR  360
DNPSVKSSGD PLERTPNAFS SGSAIEDKPC HRLSGTSVHS ICNGFSAICD SESSFKTSPV  420
VSVDKSFHGV FVASSGKTCD GIAGSAAASL PQVNSDCKLS SRNASDCLQT GFDCVNEQSE  480
SSLKHQQDGG IGKVNELCTV PRHEKENFLG VDWKPLKWTR SVSLSSRGHS GNSRSAPVDS  540
KEAVDESQQI EGTPLCFPAG DAADCVTSSA TSEEAATRKK ARLGWGQGLA KYEKKVIDDP  600
CDNGKDNEIH IPRVGSECSS TPPVTPAAAY NSSPDNEHKL FKEGNISVCF SMNDSINGQS  660
SFDKLDVSFI TNEVHWLLNL VRSDDQCSTS ASESNNAMCK LLSWKTGILK AVEMTDSEME  720
SLESEIQSSR SEYRSHFHCP AASSSLNVNG GTQLNRKNAA CNPSVLPTPL QVDSSKVRDD  780
IDSPGTATSK PVVSSPEVKA TRGVENVCIF SEDVSANSSH MMDELTPNQE IGCCPSISCD  840
VRASELCSYN PTCPNHDRLD LEDDIRLCKF IFATNKEEAG KASDELAHLL SGDGTSVVNC  900
QKFHNDLSIR DEIAKRKKLL RFTETAITLK YKSLQQLWKE DARLLEMRRN RPKSSKRLEL  960
GSRTSQYVHF KSNSSIRSRF SSPEGSGKLV PSSETISLTS QLLLDCPVKV YRDVLKMPPL  1020
ILDEKEKQMS KFVSYNGLVE DPVALEKERA LTNPWTSDEK ETFLDKLALF GKDFRKIASY  1080
LDHKTIADCV EFYYKNHKSA IFERTRKKPV RFGTQSKPIA KNAYLLTWGD KWNQESAAAA  1140
DVLAGICGSL SSEAVSSCVT SSFDHRDVHR QWKRKKVGGK RKRTWTQEEV TQNIEETCSG  1200
ESCGEMDFSA LDWTDEEKHM LLQAVKFYGS DFEMVSKYVK TRYRDECKAF YSKVKKRLGS  1260
AQAAIEVTAS GIRADSEQDM DMDVRLAIPL PVDLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-1610121099490NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-1610121099490NUCLEAR RECEPTOR COREPRESSOR 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889571.11e-154uncharacterized protein LOC112001630
RefseqXP_023889572.11e-154uncharacterized protein LOC112001630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-71MYB family protein