PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0023s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 352aa MW: 39097.3 Da PI: 8.3163 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.6e-24 | 88 | 132 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg++rsrk++e+ Kalax.0023s0024.1.p 88 DQEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGKNRSRKPVEQ 132 689***************************************997 PP | |||||||
2 | QLQ | 48.1 | 3.5e-17 | 22 | 56 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+a+Q+q+L Q+l++K++a+++PvPp+Ll+ i+ Kalax.0023s0024.1.p 22 PFSASQWQELGEQALIFKHMASGVPVPPDLLFTIR 56 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.5E-9 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.5E-12 | 22 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.459 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.512 | 88 | 132 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.0E-20 | 90 | 131 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MIMNGRASAG AGGVNGGGCR FPFSASQWQE LGEQALIFKH MASGVPVPPD LLFTIRRSLD 60 SNHLFPHPAA APLIGWNGFE MGLGRKIDQE PGRCRRTDGK KWRCSKEAFP DSKYCEKHMH 120 RGKNRSRKPV EQQVVNKSFS TPTQHSLNNT NTNTITLTTN CSKSHQSSSV ASDNHLSPPA 180 CAYYNISHPY HLHSSSSSNS RFDSTHILLH SASYYRSRYD GSSNHGSVLK EVVDEQSQSQ 240 SQSQSQSLLN EDSVKGLSSN SWHLTPLTIG MSHQMNDELQ ESSRCELMTP DDQQQTHKTV 300 YRFLEERPPD KKDSSWLNHD DKSSDSSTAQ LLISIPAATS HHLFPIFNSK S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445834.1 | 6e-82 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2K1WWV8 | 1e-80 | A0A2K1WWV8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07140.1 | 4e-81 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-50 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0023s0024.1.p |