PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0022s0149.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 38764.6 Da PI: 10.3377 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.2e-30 | 284 | 341 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+ +++tY g+Hnh Kalax.0022s0149.1.p 284 DEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTQLIVTYDGDHNHA 341 99************************988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.0E-15 | 236 | 280 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-31 | 271 | 341 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.815 | 277 | 343 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 279 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 282 | 342 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 284 | 340 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MAVELMMGYR AAATENNLPA KMEEAASAGL QSVEQLIRLL SQRQQQMDRS NSNSNSNSNG 60 SCVNELSSKV ESSDLDYGAV ADVAVNKFKK MISLLDRSRT GHARFRRAPV AQKAADPVAQ 120 TSLRSEEKAS AQSSLNGGPR AIPTSTSSQR LPPLPQHHHH HHSHPVHHKI VHSANTVLTK 180 TAPKDSTATI SFSGASSFVS GLSGETESVQ PSMSSGFQFT LMSQSSGKPP LSSSLKRKCS 240 SVDDSSRCGG SSARCHCSKK RKSRVKRVVR IPAISLKMAD IPPDEFSWRK YGQKPIKGSP 300 HPRGYYKCSS VRGCPARKHV ERAVDDPTQL IVTYDGDHNH ALTSVKEAAA AAAALVLESS 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-20 | 279 | 342 | 14 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 7e-20 | 279 | 342 | 14 | 76 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452580.1 | 1e-124 | PREDICTED: probable WRKY transcription factor 7 isoform X2 | ||||
Swissprot | Q9STX0 | 2e-89 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A1S3BVC4 | 1e-123 | A0A1S3BVC4_CUCME; probable WRKY transcription factor 7 isoform X2 | ||||
STRING | XP_008452579.1 | 1e-122 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 2e-49 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0022s0149.1.p |