PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0022s0082.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27038 Da PI: 9.9605 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl++y++ Kalax.0022s0082.2.p 9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLFDYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 99.4 | 5.1e-33 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + ++++ + + s+ e+a+Lk++i++Lq++q h++GedL+sL+lkeLq+Le+qL+++lk+iR+kK++l++e+i+el+kk k+lq +n++L Kalax.0022s0082.2.p 79 QLVAADIESNGSWLLEHARLKARIDTLQKKQSHYMGEDLDSLTLKELQNLENQLDNALKHIRTKKSQLMFESISELKKKDKALQGQNTKL 168 55555666778999**************************************************************************** PP K-box 95 rkklee 100 k+++e Kalax.0022s0082.2.p 169 AKQIKE 174 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.043 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.25E-39 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.02E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-26 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.196 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGRVQMKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLFDYATD 60 SCMERILERY ERYSSAKTQL VAADIESNGS WLLEHARLKA RIDTLQKKQS HYMGEDLDSL 120 TLKELQNLEN QLDNALKHIR TKKSQLMFES ISELKKKDKA LQGQNTKLAK QIKEKEKSQG 180 TLLDQQSHAA SPASLSAPQI CLEPLTVSRN DSGNIYQVAR DGGAAISALQ QISATALLLS 240 GC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-22 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 6e-22 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 6e-22 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 6e-22 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311552.1 | 1e-102 | agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q6E6S7 | 1e-100 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A1S3YGF6 | 1e-101 | A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog | ||||
STRING | XP_009625854.1 | 1e-101 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-92 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0022s0082.2.p |
Publications ? help Back to Top | |||
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