PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0021s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 621aa    MW: 67222.9 Da    PI: 7.0937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0021s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.41.8e-912486202374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++ L+e+A a+++g+ e a ++++rl + ++p+g+p qRla ++  AL+++l++ +++       ++++e +sse+  +++l+++ s ++
  Kalax.0021s0010.1.p 248 KQSLIEAAAAIADGKSESAAEIVTRLTQSSNPRGTPEQRLAYCMSLALKSKLTS-GEGQ------KSANEIRSSEHYESVQLLYQHSSCF 330
                          689**************************************************9.2222......22233347899999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                          k+++l+aN aI ea++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+  e+g      ++     +e+L+++ e++gvp
  Kalax.0021s0010.1.p 331 KLGFLAANLAIIEATADVKSLHVVDFDMGDGAQYHNLLQLLSLRKSGKPtSVRITAVDVGENGgggggLERWSIIAKEKLSQLSERVGVP 420
                          *********************************************77776*********9999977643334445689************ PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          +e ++l +  + d++ e+L  +p+E++aVnl+++l +l+desvs+e++rde+L+ vk+l++++v+vve+e+++n++++ +r++e++++y 
  Kalax.0021s0010.1.p 421 LELRTL-HLGVGDVSRESLCSNPDEVVAVNLAYSLSKLPDESVSTENKRDELLRRVKGLEARIVTVVEEEMNCNTAPLQTRVAECCSFYG 509
                          *****5.889******************************************************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve... 352
                          al++s+++++   + eri vE+  lgr+ vn vaceg +r+er+e l+kWr+r+++aGF+  p+s++++++ ++ ++  +  g rv    
  Kalax.0021s0010.1.p 510 ALLESMDSGV--MEAERIRVEEG-LGRRMVNTVACEGGDRVERCEVLGKWRARMGMAGFELKPVSQNVVDSLSSRINSNS-GGTRVGcpl 595
                          ******9997..7899*******.****************************************************9998.555554334 PP

                 GRAS 353 ...eesgslvlgWkdrpLvsvSaWr 374
                             e +g +++gW++r L+++SaWr
  Kalax.0021s0010.1.p 596 fvkEANGGVCFGWMGRILTVTSAWR 620
                          44388*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.267221595IPR005202Transcription factor GRAS
PfamPF035146.2E-89248620IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MSSGGLPDFF SAAASSSSAG RPVNASSSSG SVVIQQQQQP VMYHRPQFLP DHSQSGLGKR  60
TLAEFQNQRL QFQHQNPLLL LRQQQQQGVG AFPMRSVKPR IYQNPSPISP LSPIDLLPEM  120
GAAFMGRRQN SIGFGRGSVV PTPTTNLSHH HNRVFVAGNS KEEDTETEKK MMNRLHELER  180
QLLGDDNDDA RDSVSVITGN EWSDTIQNLI VTNQKPPPPP QQVNTSSPTS SSSSCSSVVA  240
SPLTICAKQS LIEAAAAIAD GKSESAAEIV TRLTQSSNPR GTPEQRLAYC MSLALKSKLT  300
SGEGQKSANE IRSSEHYESV QLLYQHSSCF KLGFLAANLA IIEATADVKS LHVVDFDMGD  360
GAQYHNLLQL LSLRKSGKPT SVRITAVDVG ENGGGGGGLE RWSIIAKEKL SQLSERVGVP  420
LELRTLHLGV GDVSRESLCS NPDEVVAVNL AYSLSKLPDE SVSTENKRDE LLRRVKGLEA  480
RIVTVVEEEM NCNTAPLQTR VAECCSFYGA LLESMDSGVM EAERIRVEEG LGRRMVNTVA  540
CEGGDRVERC EVLGKWRARM GMAGFELKPV SQNVVDSLSS RINSNSGGTR VGCPLFVKEA  600
NGGVCFGWMG RILTVTSAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-382496206375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-174scarecrow-like protein 8
TrEMBLA0A1R3IN331e-176A0A1R3IN33_COCAP; Transcription factor GRAS
STRINGXP_002513664.11e-174(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-124SCARECROW-like 8