PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0139.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 191aa    MW: 21581 Da    PI: 7.2549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17752251
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++
  Kalax.0020s0139.1.p  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDQAAR 52
                         69******9.**********8.....334*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.77E-33665No hitNo description
SuperFamilySSF541719.81E-20765IPR016177DNA-binding domain
PROSITE profilePS5103220.336764IPR001471AP2/ERF domain
SMARTSM003806.4E-36770IPR001471AP2/ERF domain
PfamPF008472.5E-10752IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-33765IPR001471AP2/ERF domain
PRINTSPR003671.0E-10819IPR001471AP2/ERF domain
PRINTSPR003671.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MARQHQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDQA ARLVCGSRAR  60
LNFQDFQSPT TTKLLSSTLL AKLQKCHTTS LQMANSSSSN RPMPDSSLDF LSKSRAGSLT  120
TVESTSSNKR SGEEEENVEL GRTKKVKVES SSSSHDEAFE QLEDDHIEQM IAELLDYGSF  180
EICSVWSHHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-17863662ATERF1
3gcc_A8e-17863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850227.11e-64PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-57ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2I4H2622e-63A0A2I4H262_JUGRE; ethylene-responsive transcription factor ERF003-like
STRINGXP_010245546.12e-62(Nelumbo nucifera)
STRINGXP_004291940.12e-62(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-39ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]