PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0020s0086.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 44278.6 Da PI: 4.7164 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.7 | 1.1e-08 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + ++++fC +++ +lC+ C ++ H+ H++v Kalax.0020s0086.1.p 16 ARACDGCMLRRARWFCASDDAFLCHACDVSVHSAnqlagrHQRV 59 578*****999*********************668888889877 PP | |||||||
2 | CCT | 66.4 | 8e-23 | 340 | 383 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Kalax.0020s0086.1.p 340 RVARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRV 383 89****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-9 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.6E-7 | 16 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.97E-11 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 3.5E-17 | 340 | 382 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.815 | 340 | 382 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLSECHTASA IGARTARACD GCMLRRARWF CASDDAFLCH ACDVSVHSAN QLAGRHQRVR 60 ISTASLGDGV AEWDRKVTRR ARTPRNGLKG KLELKEASSL IVPEIGVEEE QSCENEDLMV 120 FQVPVFDADC GFWNEDESTS AEELHRLLEF VPDDIQYTAG HEGLIGVDSS CDTELLDSKE 180 SKKMDVGFEN NERNYSRVKM EGGDDEIEAV LAFQFDSEMM NSDSRESLLD WDFGFESDEM 240 MVKGEEDVKM IAEQSGGEEA VPFGKGMLLL KLNCEQVMSA WDDQGCPWMD GTPPEFDPIR 300 DGWPKFPGVR DANAGLGNTN PDDENGGSSA GGGRVVSEER VARVTRYREK RRTRLFSKKI 360 RYEVRKLNAE KRPRMKGRFV KRVQSYVGPQ ITSLK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 366 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-58 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0020s0086.1.p |