PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0019s0162.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 903aa MW: 98504.7 Da PI: 6.752

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0019s0162.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	328	427	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++ Kalax.0019s0162.1.p 328 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 414 99************************556667788***********99899999999.*******************4.. PP S.SEE..EEEEE- CS B3 87 r.sefelvvkvfr 98 r +++lv++ ++ Kalax.0019s0162.1.p 415 RdPGGKLVIGSRK 427 4499999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-29	323	428	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.36E-20	325	425	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.51E-23	326	423	No hit	No description
PROSITE profile	PS50863	11.462	328	429	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-20	328	428	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-16	328	427	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.487	584	634	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.8E-8	589	631	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC 60 DSCKKPIHCG CASSKPFIEF LDLGGACCTT CLKISGQHAN RGDEVSNDHS VQVLSNVGGL 120 QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS 180 SNFLNLNSQS VGSPHFYIAG SNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV 240 VEGRELIKLP SPFQQSQRSR VILPKPSKCG LSLSADASKG MVQQPRVARP PAEGRGRNQL 300 LPRYWPRITD QELQQLSGDL NSPVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQS 360 EGTPIRIQDA KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRRDPGGK 420 LVIGSRKASI SSDTQDGDIA ALANGAHGES SFSDVSAACG YSGTFQSMAK NRDTHMHALP 480 EQMTVADINL GWSKNNRHRG RIIESPIQKS MVKRPKNISS KSRRLLLHAE DVLELKLTWD 540 EAQDLLRAPP SIKPSIVTVE DHEIEEFEEP PVLAKKTIFT VGASGGQEQW AQCDFCSKWR 600 RLPVDVLLPL KWTCAENFWD SCRCSCSVPD EVGAKELENL LKHGKDLKRP RTLENHKLVQ 660 DHEPSGLDAL ASAAVLGDNA GEAGETSVGA TTKHPRHRPG CTCIVCIQPP SGKGKHHPTC 720 TCNVCMTVKR RFKTLMFRKR IRQSEREAEV SQKEPVLPKE NYELTNLKGD SRHEMLQSHP 780 VEADADRTTQ NLVQVDQSSD NSDRQLDLNS HPNRGSKCLE QEMNAAVSMT RLVHAAVLPL 840 ESHLKQHGLA NSTLDASGPP QTIEEGDYGV ADEDDTVQSG SDIKDEDRSS HANQDQNVDE 900 KP*

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC  60
DSCKKPIHCG CASSKPFIEF LDLGGACCTT CLKISGQHAN RGDEVSNDHS VQVLSNVGGL  120
QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS  180
SNFLNLNSQS VGSPHFYIAG SNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV  240
VEGRELIKLP SPFQQSQRSR VILPKPSKCG LSLSADASKG MVQQPRVARP PAEGRGRNQL  300
LPRYWPRITD QELQQLSGDL NSPVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQS  360
EGTPIRIQDA KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRRDPGGK  420
LVIGSRKASI SSDTQDGDIA ALANGAHGES SFSDVSAACG YSGTFQSMAK NRDTHMHALP  480
EQMTVADINL GWSKNNRHRG RIIESPIQKS MVKRPKNISS KSRRLLLHAE DVLELKLTWD  540
EAQDLLRAPP SIKPSIVTVE DHEIEEFEEP PVLAKKTIFT VGASGGQEQW AQCDFCSKWR  600
RLPVDVLLPL KWTCAENFWD SCRCSCSVPD EVGAKELENL LKHGKDLKRP RTLENHKLVQ  660
DHEPSGLDAL ASAAVLGDNA GEAGETSVGA TTKHPRHRPG CTCIVCIQPP SGKGKHHPTC  720
TCNVCMTVKR RFKTLMFRKR IRQSEREAEV SQKEPVLPKE NYELTNLKGD SRHEMLQSHP  780
VEADADRTTQ NLVQVDQSSD NSDRQLDLNS HPNRGSKCLE QEMNAAVSMT RLVHAAVLPL  840
ESHLKQHGLA NSTLDASGPP QTIEEGDYGV ADEDDTVQSG SDIKDEDRSS HANQDQNVDE  900
KP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-69	306	435	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017086.2	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Refseq	XP_017983611.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A061GYW3	0.0	A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRING	EOY34705	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	high-level expression of sugar-inducible gene 2

Link Out ? help Back to Top
Phytozome	Kalax.0019s0162.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]