PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0019s0056.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 18524.5 Da PI: 9.846 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7e-16 | 24 | 73 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++kG+r++k +g+Wv+eIr+p + r +lg++ tae Aa+a++ a +l+ Kalax.0019s0056.1.p 24 KKFKGIRRRK-WGKWVSEIRVPG----TpNRLWLGSYSTAEAAAAAHDVASFYLR 73 59*****998.**********82....589******************9998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.82E-17 | 24 | 78 | No hit | No description |
Pfam | PF00847 | 6.4E-9 | 25 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.584 | 25 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-22 | 25 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-15 | 25 | 76 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-23 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-8 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSNSSSSGGG ASEQQSRLLM SKQKKFKGIR RRKWGKWVSE IRVPGTPNRL WLGSYSTAEA 60 AAAAHDVASF YLRSSPTVEG LKEGSDGVMS LSPRSVQKAA SDAGMAVDAA HRVVLMQQSG 120 GNGTSNNNGS HSRDVPVDSG REENWSFGGS WMVGDNNGGK CKPSDLNISV DDYL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021813065.1 | 4e-37 | ethylene-responsive transcription factor ERF020-like | ||||
TrEMBL | A0A314Y2K1 | 4e-36 | A0A314Y2K1_PRUYE; Ethylene-responsive transcription factor ERF020 | ||||
STRING | EMJ27894 | 4e-36 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 3e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0019s0056.1.p |