PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0018s0184.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 204aa MW: 22814.1 Da PI: 8.9495 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.3 | 1.4e-68 | 10 | 171 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q + ++l++ + +++ + + +++++ + ++s+ t+ Kalax.0018s0184.2.p 10 GPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSALSWQDLHHYHQLTQAPNYLNGGQDCRIDNLGSSSKITN 99 589********************************************9999999999999999999999999999999999888888887 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++++ ++ e v+rPPek+qrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Kalax.0018s0184.2.p 100 KTMMRVPAQKPTEE---RVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 171 77766554444333...469*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-71 | 11 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.06E-8 | 110 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 119 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGSSCVDVVG PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCTNLW SVNMAAAFQS 60 ALSWQDLHHY HQLTQAPNYL NGGQDCRIDN LGSSSKITNK TMMRVPAQKP TEERVVNRPP 120 EKKQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNNNQ 180 PTRFDQNIAG KRLMSKAAGL MKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450896.1 | 1e-100 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006475869.1 | 1e-100 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 7e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GY39 | 2e-98 | A0A067GY39_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UP20 | 2e-98 | V4UP20_9ROSI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 3e-97 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-83 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0018s0184.2.p |
Publications ? help Back to Top | |||
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