PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0018s0143.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 412aa MW: 45875 Da PI: 6.4634 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.1 | 2.5e-07 | 348 | 380 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Kalax.0018s0143.1.p 348 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 380 69*****************************87 PP | |||||||
2 | ELK | 29.3 | 1.9e-10 | 301 | 322 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ Kalax.0018s0143.1.p 301 ELKHELKQGYKDKIVDIREEIL 322 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.6E-19 | 136 | 180 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-17 | 138 | 179 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.6E-26 | 189 | 244 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.7E-19 | 194 | 243 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 301 | 321 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.4E-5 | 301 | 322 | IPR005539 | ELK domain |
SMART | SM01188 | 5.1E-4 | 301 | 322 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.483 | 321 | 384 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-15 | 323 | 386 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-9 | 323 | 388 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-10 | 324 | 385 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 328 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-17 | 341 | 380 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MAYQSSRNHM LSEMDQLQQF SERQMSENGS VVHNHPHAVV SGGGGPTWLS TAVIQQHSHH 60 QYAAAADNNN NNFQLHLQTN SDSSNSPATT GTNRWMSPEA KIGIGGGSGG GGSFRKEEEM 120 AMIVNEYGGV INWEKARFKA EILSHPLYEQ LLAAHVSCLR IATPVDQLPQ IDAQLAQSHN 180 LVAKYADAVQ GSCVDDKELD QFMTQYVLLL NSFKEQLQQH VRVHAMEAVM ACWELEQALQ 240 NLTGVSPGEG TGATMSDDED DRAEGELNMF EGGMDCSDSM GLGPLVPTDS ERSLMERVRQ 300 ELKHELKQGY KDKIVDIREE ILRKRRAGKL PGDTTSHLKA WWRSHSKWPY PTEEDKARLV 360 QETGLQLKQI NNWFINQRKR NWHSNSSTAT ASKSKRKSNA GTTSSNNEAF R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU272787 | 0.0 | EU272787.1 Kalanchoe x houghtonii class 1 knox protein (KN1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656543.1 | 1e-170 | PREDICTED: homeobox protein knotted-1-like 13 isoform X2 | ||||
Refseq | XP_017215036.1 | 1e-171 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | P48000 | 1e-166 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | B1P379 | 0.0 | B1P379_9MAGN; Class 1 knox protein | ||||
STRING | GSMUA_Achr7P05170_001 | 1e-168 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-157 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0018s0143.1.p |
Publications ? help Back to Top | |||
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