PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0018s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 397aa    MW: 43455 Da    PI: 7.2226
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0018s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-392888262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +++++kcprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Kalax.0018s0038.1.p 28 PDHHVKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 88
                         57899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.0E-333086IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-283286IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3013286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSPDQTPAKV ATAAPKEGQD RKLRLPPPDH HVKCPRCDSP NTKFCYYNNY SLSQPRHFCK  60
TCRRYWTKGG ALRNVPIGGG CRKNKKMKQR LAGMSNSRDS SSCEIMGSTT GGLNFFQGFL  120
TPSMDFQLGS INTPPPPSTS MFPVVTGGVD TNFSLYEPHH SASQVNSSHH QSSSAVGTLM  180
GFNYLKPAAQ TGSGGDVLLG GIQQQLGSSS NNSMIVHSSL ASSIESLSSI NQELHWKLQQ  240
QRLAVLFSSG DHPEKRISGQ TDMGQVEEEH QFDHHQQPQS QAQKFLLQPI LFQNLETTKE  300
AHQYSAEESR IMEGAKVPEK SSLVENGGGN NSTTEWFFDV NPYTNGSRSN NSGGLNNDDS  360
MINQAAVVND DNPNNNYWNT GIQAWSDLQH YNGALP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-33DNA binding with one finger 2.4