PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0018s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38555.9 Da PI: 6.581 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++ q+G+g +W + ++++g++R++k+c++rw++yl Kalax.0018s0021.1.p 14 KGPWSPEEDAKLKDYIDQHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed l+ + G++ W+ Ia+ ++ gRt++++k++w++ Kalax.0018s0021.1.p 69 GGFSEDEDHLICSLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.309 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.14E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 15.637 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-9 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYID QHGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEDEDHLIC SLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLLGK 120 QRKEQNARRA SLLKQQVVKE ESTYYEPAHP YMVHANQQGE LMSIIHHTNQ ECFSSVSPNM 180 VAVPYPNQQV YAYAEQQLEN TNNSLNHQYT AQEYLYGEAY HTNISSEFYS SDSGLLPNLE 240 RAGDTDPNLL LDGPINNFSS MERQLFEDFL FGNNQLGFMN MVAGSGASMT SSSGGNAGTS 300 PMESTTSTWG DQAATALLPS SSSFELDFQQ WSGNNGIHVA ASIQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647487.1 | 3e-93 | PREDICTED: transcription factor RAX3 | ||||
Swissprot | Q9M2Y9 | 3e-81 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A438KS06 | 7e-92 | A0A438KS06_VITVI; Transcription factor RAX3 | ||||
TrEMBL | D7UEC5 | 7e-92 | D7UEC5_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s1352g00010.t01 | 1e-92 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 4e-77 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0018s0021.1.p |
Publications ? help Back to Top | |||
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