PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0147.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 357aa    MW: 39571 Da    PI: 9.708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-172067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd ll+++vk++G ++W+ + ++ g+ R++k+c++rw+++l
  Kalax.0017s0147.1.p 20 KGPWKPEEDMLLIEYVKKHGERDWNMVRKHSGLARCGKSCRLRWNNHL 67
                         79********************************************97 PP
2Myb_DNA-binding51.72e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+++++E++l+ +++ q+G++ W++Ia++++ gRt++++k++w++
  Kalax.0017s0147.1.p  73 KGPFSPDEEKLICELHSQMGNK-WARIAAMLP-GRTDNEIKNFWNT 116
                          79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8631571IPR017930Myb domain
SuperFamilySSF466894.87E-3018114IPR009057Homeodomain-like
SMARTSM007173.6E-151969IPR001005SANT/Myb domain
PfamPF002499.1E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-242175IPR009057Homeodomain-like
CDDcd001671.22E-132267No hitNo description
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PROSITE profilePS5129419.59472122IPR017930Myb domain
PfamPF002492.4E-1573116IPR001005SANT/Myb domain
CDDcd001671.49E-1175116No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2376120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVAKDEKVDA ASPAQAELKK GPWKPEEDML LIEYVKKHGE RDWNMVRKHS GLARCGKSCR  60
LRWNNHLRPN LRKGPFSPDE EKLICELHSQ MGNKWARIAA MLPGRTDNEI KNFWNTRVKR  120
LARKGVPLYP ADVQSPRPDL LNPYLHHLDA QNNASSSSLS TSSSSNLQLH PPALLSPTTP  180
TSHPLLFPPS ASSQTFQDYD VVLQDSMAMY DAALENFRQQ QQQQQQMFAS AMMNDAPSPQ  240
LTSSLQRFKR HRSVPNLTIS VPPVRHVALH PFSPLGLSTS SSSPMGSGLS DYYDVIHARR  300
VLAAFIRVVA DWDGALADRF AAGRFDAAAR HAAAAVVFPS GELQAHLSPS DVVFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-34171204106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581293.23e-64LOW QUALITY PROTEIN: transcription factor MYB97
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-59myb domain protein 101