PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0140.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 355aa    MW: 39082 Da    PI: 6.2752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-14158204354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+Er+RR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Kalax.0017s0140.1.p 158 KSHSEAERKRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 204
                          79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.774155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-14158207No hitNo description
SuperFamilySSF474591.7E-14159212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15159215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-5242304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKEEDHYSQS IQNFQEQILL QQQIMQSQNM NNSNMMMTSS DHHVYGGGGL IYPSEVSPIL  60
PWSLPQVHPF LPQPPYGPAN SFSVFNRSRA GHPQHQFHNS LQFAYDGIGP SSDHHNLRLL  120
SEALGPVMNQ PGVSPFGGEL GKMTAQEIMD AKALAASKSH SEAERKRRER INNHLAKLRS  180
LLPSTTKTDK ASLLAEVIQH VKELKRQTAT ISETAMVPTE ADELTVDAAD DEYYGKLVIK  240
ASICCEDRPD LLPDLIKTLK ALKLKTLKAE ITTLGGRVKN VLFITGEDHD HCEEGEEMQM  300
QYSVSSIQEV LRGVMEKGGG GSEDGSAGSV KRQRTTNSND ASNMNISMLE NRSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297146.11e-129PREDICTED: transcription factor bHLH30
RefseqXP_011462943.11e-129PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y12e-98BH030_ARATH; Transcription factor bHLH30
TrEMBLW9R4021e-120W9R402_9ROSA; Uncharacterized protein
STRINGXP_004297146.11e-129(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]