PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0017s0138.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | RAV | ||||||||
Protein Properties | Length: 385aa MW: 41967.4 Da PI: 9.413 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.9e-14 | 70 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g Kalax.0017s0138.1.p 70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 118 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 97.6 | 7.7e-31 | 197 | 300 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kv tpsdv+k++rlv+pk++ae+h ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v Kalax.0017s0138.1.p 197 FEKVVTPSDVGKLNRLVIPKQHAEKHfplnsssaaLAAAAKGVLLNFEDCGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDVVS 286 99*************************9988887733345999*********************************************** PP EEE-SSSEE..EEE CS B3 82 Fkldgrsefelvvk 95 F++++ +++l++ Kalax.0017s0138.1.p 287 FERSNGADGQLYID 300 **887677777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-26 | 70 | 125 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-18 | 70 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-9 | 70 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-21 | 71 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 71 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.574 | 71 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-5 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-5 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-38 | 193 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-30 | 193 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-29 | 195 | 299 | No hit | No description |
SMART | SM01019 | 3.8E-24 | 197 | 305 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.508 | 197 | 305 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-28 | 197 | 301 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDGSLTDESS ATSDSTSVAV DVIGSMKSTM MTEKLSRMGS GASVIIDSVM AGAVVGAKGV 60 EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD TAAQRFRGRD 120 AVTNFKPLAT ETVDRDAVES AFLNSRSKAE IVDMLRKHTY ADELEQSRRS IGLDNGSDGV 180 GRVCGGQHPV GAKLHLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLNSSSA ALAAAAKGVL 240 LNFEDCGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLL AGDVVSFERS NGADGQLYID 300 LQPKSRHNES DSTARVLSDS LVPGHSTIRL FGVNIIKDPL CNIILAKNPN NNKRMRSGHE 360 DNDLFALQCM KKQRVSAPAI VAYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-54 | 196 | 305 | 13 | 118 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022881998.1 | 1e-149 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 1e-132 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | W8CWZ4 | 1e-147 | W8CWZ4_OLEEU; Tempranillo | ||||
STRING | cassava4.1_010157m | 1e-145 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-126 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0017s0138.1.p |