PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0124.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 372aa    MW: 41059.9 Da    PI: 6.3417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd ++  G g+W++ ++  g++R++k+c++rw +yl
  Kalax.0017s0124.1.p 15 KGPWTPEEDKKLVDHIETNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.61.2e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +++++  lG++ W+tI+++++ gRt++++k++w+++l
  Kalax.0017s0124.1.p  68 RGKFSEEEEQAIINLHSVLGNK-WSTISSHLP-GRTDNEIKNFWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3531062IPR017930Myb domain
SuperFamilySSF466898.61E-3112109IPR009057Homeodomain-like
SMARTSM007174.1E-141464IPR001005SANT/Myb domain
PfamPF002495.4E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231669IPR009057Homeodomain-like
CDDcd001674.01E-111762No hitNo description
PROSITE profilePS5129427.19363117IPR017930Myb domain
SMARTSM007177.1E-1767115IPR001005SANT/Myb domain
PfamPF002497.9E-1668113IPR001005SANT/Myb domain
CDDcd001671.26E-1270113No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMGRSAGIDE HGLKKGPWTP EEDKKLVDHI ETNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQAII NLHSVLGNKW STISSHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPITHRPR TDHLNLLANL PQLLAAANLT HLISNSANPW DNAMRLQQHL SSADHQQHLA  180
KVQLMSNLLQ ALNSAANPPL NLDLMMSSLF GKQGSFQDQR VLESLIRMNN SGQMEASDDE  240
IGNGGQIGHF SAGLCNPMQL DDFTTLGSCE PFLNSNSSQF GGSYCAPFGD YISEIPALVS  300
ATSPERGISS INDNTDNSKY PSAEASNPTS MTSTTFEAWG DHHQMVDDEA SESYWKDIIG  360
QASSSSWPIR L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022746687.11e-123transcription factor MYB41-like
TrEMBLA0A061EYD81e-120A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101101e-120(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-94myb domain protein 9