PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0016s0176.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 284aa    MW: 30875.8 Da    PI: 7.5223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0016s0176.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W +eEde+l  +++++G+g +W + +++ g++R++k+c++rw++yl
  Kalax.0016s0176.1.p 14 RGPWCPEEDEILRSYIELHGTGgNWIALPSKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding42.91.1e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+eEd  +  +  ++G++ W+ Ia+++  gRt++++k++w++
  Kalax.0016s0176.1.p  69 GAFTEEEDRVIFSLYSEMGSR-WSVIAARLH-GRTDNDVKNHWNT 111
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.664962IPR017930Myb domain
SuperFamilySSF466894.79E-2712109IPR009057Homeodomain-like
SMARTSM007173.4E-101364IPR001005SANT/Myb domain
PfamPF002497.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001675.31E-81662No hitNo description
PROSITE profilePS5129422.62363117IPR017930Myb domain
SMARTSM007174.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.0E-1269111IPR001005SANT/Myb domain
CDDcd001673.72E-1070113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWCPE EDEILRSYIE LHGTGGNWIA LPSKAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTEEEDRVIF SLYSEMGSRW SVIAARLHGR TDNDVKNHWN TKLKKLMVMK  120
DQREAYAAAH SSSVSSHHES YSNFVKFPNM KAKTHQESAS AVPNLRPGVF GYGSSLAFAH  180
CDPVGFTAPT GLMAMPARYA SKAESDLSGG SSSVNNGEGF MIDMLNYGEG VGDGCHELLQ  240
SAVLGSGDQK CSGTEDLAGN GAVPTFSAML SEYMYQGGLV DQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141157106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020700672.12e-73transcription factor MYB36
TrEMBLA0A2I0WSE96e-72A0A2I0WSE9_9ASPA; Transcription factor RAX2
STRINGXP_009620040.15e-72(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-68MYB family protein