PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0016s0156.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23683.9 Da PI: 6.9362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 57 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g Kalax.0016s0156.1.p 57 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAAMSIKG 107 579****998.**********843...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-12 | 57 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 58 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 58 | 116 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-35 | 58 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 58 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.02E-32 | 59 | 117 | No hit | No description |
PRINTS | PR00367 | 6.8E-10 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MIQPSFSSDT VESSCNSAES TQSKMGGIQN KKVKATTAAA AVKKRARVVD KCESKHPVFR 60 GVRMRNWGKW VSEIREPRKK SRIWLGTFPT PEMAARAHDV AAMSIKGANA ILNFPELAGS 120 LPRPASSSPR DVQAAAAKAA AMEHLNLSPS SSVSSLTEAD DELGEIVQLP RLDEAADGGR 180 CEFLLMDYSG GGWVYPPLLM EDPIHAFDDA PLWPQDYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 54 | 115 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462028.1 | 3e-61 | dehydration-responsive element-binding protein 3 | ||||
Refseq | XP_024165955.1 | 8e-61 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q39127 | 1e-53 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A200QDK7 | 5e-60 | A0A200QDK7_9MAGN; AP2/ERF domain | ||||
STRING | XP_010249578.1 | 7e-60 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 2e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0016s0156.1.p |
Publications ? help Back to Top | |||
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