PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0016s0152.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 518aa MW: 57173.6 Da PI: 5.2516 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.9 | 1.4e-13 | 7 | 40 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ +TplWR+gp ++ LCnaCG ++r kg Kalax.0016s0152.1.p 7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKG 40 99**************55555**********998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-7 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-10 | 5 | 45 | No hit | No description |
CDD | cd00202 | 1.71E-13 | 6 | 54 | No hit | No description |
PROSITE profile | PS50114 | 10.976 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-10 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.1E-11 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 6.1E-8 | 275 | 361 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 518 aa Download sequence Send to blast |
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYAPLHS RAEPDNFGDH 60 KELRIKITYG RDKEDICPKR KRTNENAMTG SISSNYNDIF WKAMDDDTSN RSSSGSAISN 120 SESCAQFGTT YFNEFTGPAQ VVMADRTKPA KKRTCIPRPR SSSIAALTKD LCTILHQQQS 180 SGFSVSSEED LLFESDKSIF SAETGHGSYL IRDTSSMTRE EDSEASSFSV NNKPYLGSET 240 SFYPKPLPVH TSRVKGVAND IMSNNPSRHH EKTDERNSEE SEISEILGSQ SSALTTINLK 300 DVYNHEEFLR HLTDEEQEQV LKCLPYVNDS RLSSCLQSLF DSSHFPDSFS TFQKLITEEL 360 FGASLPGITS DDCDTFNRLA FCNLLKSKSV QLFNVMKKCK HSAAATIAYP ETKTLMKIPN 420 TATSLVCKEK TEADDIDNDS ACSSQKNLLA LPADSNPYML DPLSYSDETC DQDLLLDMPS 480 SNSFPDAELI FSAPSFGIPH DRLGSCSCSA YPNFIGQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031967.1 | 1e-160 | PREDICTED: GATA transcription factor 26-like | ||||
TrEMBL | A9PFA9 | 1e-157 | A9PFA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s08080.1 | 1e-158 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-89 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0016s0152.1.p |