PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0016s0124.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 347aa    MW: 38608.3 Da    PI: 6.0523
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0016s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092723081955
                          HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +k +yps++++  LA+++gL+++q+ +WF N+R ++
  Kalax.0016s0124.1.p 272 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 308
                          45679*****************************885 PP
2ELK41.23.5e-14228249122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK qLlrKYsgyLgsLkqEF+
  Kalax.0016s0124.1.p 228 ELKGQLLRKYSGYLGSLKQEFM 249
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-2090134IPR005540KNOX1
PfamPF037904.2E-2191130IPR005540KNOX1
SMARTSM012565.4E-22139191IPR005541KNOX2
PfamPF037914.0E-20143185IPR005541KNOX2
PROSITE profilePS5121311.174228248IPR005539ELK domain
PfamPF037895.7E-11228249IPR005539ELK domain
SMARTSM011882.8E-8228249IPR005539ELK domain
PROSITE profilePS5007113.054248311IPR001356Homeobox domain
SMARTSM003891.9E-12250315IPR001356Homeobox domain
SuperFamilySSF466891.33E-19250326IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27253313IPR009057Homeodomain-like
CDDcd000861.37E-12260312No hitNo description
PfamPF059208.2E-17268307IPR008422Homeobox KN domain
PROSITE patternPS000270286309IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEADCDGGGV GFGGNGLSSS GNIGGLMMMM PPPPRSSTAG TNNSSSSSPN PYHIRPFFFP  60
PTPNNNSHDN PNYSSRDNYI MDADASGSSE ALKAKIMSHP HYHRLVAAYV NCQKVGAPPE  120
VVEKLEQACA AGAGLSRSIS GCLGEDPGLD QFMEAYCEML AKYEQELSKP FKEAMAFLSR  180
IESQFKLALS LSSSDSPAYG QGSDRNGFPD EDIDVDNDFI DPLAEDRELK GQLLRKYSGY  240
LGSLKQEFMK KRKKGKLPKE ARQQLLEWWT RHYKWPYPSE SQKLALAEST GLDQKQINNW  300
FINQRKRHWK PSEDMQFVVM DGAHPHYYMD NMMGNPYPMD ISPGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243252LKQEFMKKRK
2249253KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693280.11e-152PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-137HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA5X9E91e-158A5X9E9_KALDA; STM protein (Fragment)
STRINGGorai.010G183800.11e-150(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-123KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]