PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0016s0052.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91207.2 Da    PI: 6.3148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0016s0052.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.3e-18563357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0016s0052.2.p  5 KYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                         5678*****************************************************97 PP
2START155.34.9e-491533602204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++ +Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++  ++l  + ++  g
  Kalax.0016s0052.2.p 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPM-KVAEILKDTPSWFRDCRTHDVLSILPTAngG 241
                          68999*****************************************************.8899999999***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +l+l++++++a++++++ Rdf+ +R+i +l++g++v++++S++  +  p+   s ++vRae++pSg+li+p+++g+s +++v+h dl+  
  Kalax.0016s0052.2.p 242 TLELIYMQTYAPTTMSSgRDFWKLRFISSLEDGSLVVCERSLNASTGGPTgpsSLNFVRAEVFPSGYLIRPCEGGGSIIHIVDHLDLDPC 331
                          **********************************************999999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          + +++lr+l++s+ + ++k++va+lq+ +
  Kalax.0016s0052.2.p 332 SAPEILRPLYESSKIIAQKITVAALQHIR 360
                          **************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532164IPR001356Homeobox domain
SMARTSM003898.6E-16268IPR001356Homeobox domain
CDDcd000861.89E-16565No hitNo description
SuperFamilySSF466891.97E-16566IPR009057Homeodomain-like
PfamPF000463.6E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-18763IPR009057Homeodomain-like
CDDcd146862.94E-65796No hitNo description
PROSITE profilePS5084823.795143344IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-16151329IPR023393START-like domain
SMARTSM002346.6E-40152362IPR002913START domain
PfamPF018528.5E-47153360IPR002913START domain
SuperFamilySSF559615.36E-31153364No hitNo description
PfamPF086703.8E-45687831IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAECPKPSSL KRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QTVNKKLTAL NRLLMEENER LQKQVSHLSY DNGFMRQKLR SVSATTNASC  120
ESVVMSGPPH SQQNPTHQHP ERDANSPAGL LAIAEETLAE FLSKATGTAV NWVQMIGMKP  180
GPDSIGIVAV SRNCKGVAAR ACGLVSLEPM KVAEILKDTP SWFRDCRTHD VLSILPTANG  240
GTLELIYMQT YAPTTMSSGR DFWKLRFISS LEDGSLVVCE RSLNASTGGP TGPSSLNFVR  300
AEVFPSGYLI RPCEGGGSII HIVDHLDLDP CSAPEILRPL YESSKIIAQK ITVAALQHIR  360
QIAQENCGEI KYGGKQPAVL RTFSQRLSRG FNDAVNGFAD DGWSLLDSVG MDDVTISINM  420
SASKFLGSQS NSAALFPAFG GGVLCAKASM LLEDVPPAVL VRFLREHRSE WADYGIDAYS  480
ATALRASPFA IPCSKLNTLP SNQVILPLAH TIELEEFLEV VRLEGQAFCP EDIAFARDMF  540
LLQLCSGIDE NEAGPCAQIV FAPIDESFAD DALLLPSGFR VISLENKADE PGATRTLDLA  600
SALEVHTTGA QAAGGSGANH FKHRAVLTMA FQFTFENHLR DSVASMARQY VRSVVGAVQR  660
VAMALSPARL GSQMVVKSFP GSTEAITLAR WIAQSYKIHT GEELVRVYSQ AGDSVLKLLW  720
QISDAVMCCS LTTNASPVFT FANQSGLDML ETTFGSLQDI KLEKTLNEAG HKSLLAEFPK  780
ITQQGFAYLP AGNCMSSMGR PISYDQAIAW KVQDDEEVNQ CLAFMFVNWS FM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2N9J8X20.0A0A2N9J8X2_FAGSY; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]