PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0015s0212.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 191aa MW: 22011.6 Da PI: 8.3155

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0015s0212.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80	1.6e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri n +nr vtfskRr gi KKA+E+ vLCda+v++i+f+s+gk++ey+s Kalax.0015s0212.1.p 9 KRIANATNRMVTFSKRRCGITKKAKEITVLCDAKVSLIVFASNGKMHEYCS 59 79***********************************************96 PP
2	K-box	73.4	6.3e-25	71	160	1	90
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yq++sgk+l+eak+e+l++e++++kke++n+q e+Rhl Ged++ L++ +L+++e+ Le +l+++R+k +++++++ +++++ e+e++e Kalax.0015s0212.1.p 71 YQNQSGKRLWEAKHENLSNEIDRIKKENDNMQIELRHLRGEDIGALDIPQLMEMEDMLEMGLTNVREKMMDIYKMKKRNTRMLEEETSEL 160 899**********************************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.913	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-34	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-33	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.98E-35	2	80	No hit	No description
PRINTS	PR00404	4.9E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-20	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	9.2E-16	82	162	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.917	84	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGRGKIEIKR IANATNRMVT FSKRRCGITK KAKEITVLCD AKVSLIVFAS NGKMHEYCSH 60 NSSLSDILDI YQNQSGKRLW EAKHENLSNE IDRIKKENDN MQIELRHLRG EDIGALDIPQ 120 LMEMEDMLEM GLTNVREKMM DIYKMKKRNT RMLEEETSEL SYSVVNPAYI LISLKSETYI 180 HSFMVLITCV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-15	1	59	1	59	MEF2C
5f28_B	4e-15	1	59	1	59	MEF2C
5f28_C	4e-15	1	59	1	59	MEF2C
5f28_D	4e-15	1	59	1	59	MEF2C
6byy_A	4e-15	1	59	1	59	MEF2 CHIMERA
6byy_B	4e-15	1	59	1	59	MEF2 CHIMERA
6byy_C	4e-15	1	59	1	59	MEF2 CHIMERA
6byy_D	4e-15	1	59	1	59	MEF2 CHIMERA
6bz1_A	4e-15	1	59	1	59	MEF2 CHIMERA
6bz1_B	4e-15	1	59	1	59	MEF2 CHIMERA
6bz1_C	4e-15	1	59	1	59	MEF2 CHIMERA
6bz1_D	4e-15	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267875.1	2e-79	agamous-like MADS-box protein MADS9
Swissprot	Q0HA25	1e-79	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A2C9U1H4	2e-77	A0A2C9U1H4_MANES; Uncharacterized protein
STRING	cassava4.1_022750m	3e-78	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	9e-67	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0015s0212.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]