PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0015s0146.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 385aa    MW: 43314.9 Da    PI: 6.5136
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0015s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-093113462055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Kalax.0015s0146.1.p 311 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 346
                          4679*****************************885 PP
2ELK35.42.2e-12266287122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          +LK +L++KYsgyL+sLkqE+s
  Kalax.0015s0146.1.p 266 DLKIHLMKKYSGYLSSLKQELS 287
                          69******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.3E-19118162IPR005540KNOX1
PfamPF037908.1E-21119161IPR005540KNOX1
SMARTSM012562.4E-26171222IPR005541KNOX2
PfamPF037911.4E-23176220IPR005541KNOX2
SMARTSM011884.7E-6266287IPR005539ELK domain
PROSITE profilePS5121310.72266286IPR005539ELK domain
PfamPF037893.9E-9266287IPR005539ELK domain
PROSITE profilePS5007113.167286349IPR001356Homeobox domain
SuperFamilySSF466891.2E-19287361IPR009057Homeodomain-like
SMARTSM003892.6E-12288353IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27291350IPR009057Homeodomain-like
CDDcd000864.89E-12298350No hitNo description
PfamPF059201.5E-16306345IPR008422Homeobox KN domain
PROSITE patternPS000270324347IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEEYNNQLRE NNSSPRANFL YANPVSAASS YGIHSSTGSR STGANAASVA GQSGGSSSAF  60
QQHLYFHPDQ HNSGVKSELA ATTSQFLGQK FHQYPLGIIR ENCGNERGDH SQENDEAAAI  120
KAKIMSHPQC SNLLQAYMDC QKVGAPPQVV AQLVAAREEF ENRQRSSSSS SGKDASRDPE  180
LDQFMEAYYD MLVKYREELT RPLQEAMDFM RRIESQLNML GAGPIKSYNP SDEKSSEGVG  240
SSEEEGDNGG ETAQLPEIDP HAEDRDLKIH LMKKYSGYLS SLKQELSKKR KKGKLPKEAR  300
QKLLSWWELH YKWPYPSETE KVALAESTGL DQKQINNWFI NQRKRHWKPS EDIQFMVMDG  360
MHHQNYMDGH YQLGPDHSSY HMGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281290LKQELSKKRK
2287291KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903746.11e-159homeobox protein knotted-1-like 2
SwissprotO041351e-149KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGEOY156241e-157(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-100KNOTTED-like from Arabidopsis thaliana