PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0015s0101.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 318aa MW: 33833.1 Da PI: 8.5905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0015s0101.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+ l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kalax.0015s0101.1.p 53 KEQPLPCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 113 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MNAAQWQQQE IAVKPVEELI PSSNICSSSK ANNSSGGGGA EKKAAGTVVR PSKEQPLPCP 60 RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNI PVGGGSRKNK RSPSSTSSAP 120 PGVAAKKLFV HPSSLQNPNT MIHQPERAGH DLNLSFPNHH QDYRSMSDFV HLPNISSQTS 180 ATTTATSHLS ALELLTGMTS RGGVGGGFSN AFMPISDPDS VYSSTSFSNF MHDFKPPTLN 240 FSLDNGLGIG QSGSAGFTHS DSDQISTSGG GGGGRNQHQA DDHHHQHQQQ AEQNRGHGVV 300 STGYWTGMLG GGSGSDW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439815.1	2e-76	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
TrEMBL	A0A2N9G016	3e-75	A0A2N9G016_FAGSY; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	7e-75	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0015s0101.1.p