PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0015s0085.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 506aa MW: 55884.2 Da PI: 6.6041 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26 | 1.6e-08 | 425 | 463 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp +e+ LA k gLt +qV++WF N R + Kalax.0015s0085.2.p 425 MFQNflHPYPRDSEKHMLAVKSGLTRSQVSNWFINARVR 463 5787779******************************88 PP | |||||||
2 | BELL | 53.6 | 5.5e-18 | 310 | 370 | 11 | 72 |
BELL 11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +L ll++ d+ Y ++ +++ v+ssF+ ++g ++ ++++++Al+++S+ +++L+++i+ qi Kalax.0015s0085.2.p 310 QLQALLQMADEGYDKCSREVRNVVSSFHPITGSDP-EVHARFALQTTSFLYKNLRERISAQI 370 6888999****************************.************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.3E-7 | 238 | 368 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-13 | 251 | 367 | IPR006563 | POX domain |
CDD | cd00086 | 1.09E-10 | 407 | 468 | No hit | No description |
SMART | SM00389 | 2.5E-4 | 407 | 471 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-15 | 409 | 475 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 410 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.5E-15 | 424 | 463 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 10.916 | 426 | 467 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MHSSSYYSTH LIEDEMGSYV PLETPRADYN CASLCISGSY ADHLPSAFDL NNQQSQIMSG 60 YPVYSGLHGG EMIPDVLASA HPPDVTLFGL RQDCENACEE QFGEGTLVPA TALASLLASR 120 ACLYQDDPTT CGSGNPRAFS YTSFDSQMHG DTASNVAVFY GDGFDSWAAT PDANLPPTYA 180 YNPAMLSNEL SLSLCQSSVQ DPCSGLGCSC ITSRRDSGRG YEQSSSGKAS GHDRSLTYPA 240 RRTLQSSPSS SYNLKAVQQI LADLSRFLMG NVDLGSCSAR SPGNVASVSG ENSESDGSEP 300 SAATLSLQKQ LQALLQMADE GYDKCSREVR NVVSSFHPIT GSDPEVHARF ALQTTSFLYK 360 NLRERISAQI LNLKASMRID QESAFENSFL HKQWALQQQR RREHQLWRPQ RGLPERCVSV 420 LRAWMFQNFL HPYPRDSEKH MLAVKSGLTR SQVSNWFINA RVRIWKPMIE EMYAEISRRK 480 THWKSHAAEN SVRGHSSMGN QSLRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 413 | 470 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 413 | 470 | 1 | 58 | Homeobox protein Meis1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-74 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0015s0085.2.p |