PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0013s0266.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 1047aa MW: 114965 Da PI: 7.5839 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.9 | 9.3e-41 | 125 | 202 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kalax.0013s0266.1.p 125 TCQVESCMVDLSNAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 202 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-32 | 120 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.958 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-37 | 124 | 204 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-29 | 126 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 6.37E-6 | 791 | 941 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.3E-5 | 820 | 941 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.40E-5 | 834 | 941 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1047 aa Download sequence Send to blast |
MARKRDLSYQ QQELMIDQPH HPSGGLNNSR DYWNSNRWNW DCTRFVAQQV DGDAMNLDTP 60 VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGCGN 120 GNHPTCQVES CMVDLSNAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD 180 EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLT ALARAQGNQD 240 NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQNGSSANS 300 SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT ESADTYQPDP RVLSKRTILD 360 FSSIGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS 420 SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTM SFDLFGGSKK 480 GVEVDFCKGS PNQVGYASPV SAYSPSSSTC GAQDLTGRIL FKLFDKDPSH LPVALRSEIL 540 AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEKNLL EQVSRLLQRT DIDIWREGRF 600 LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH 660 CTYMGGYITK DICNTTVHGS TCDGTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII 720 ADSTICQELR QLEFEFETDL RLNDAMSEVQ ESDVLWPKAE VLHFLNELGW LFQTKDSSNT 780 LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGNI PVEVSEMVSG IQLLHRAVKR 840 RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CAGPGGLTPL HIAACTSGLE DVVDALTNDP 900 TELGLCCWES QLDESGRSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEDNETMEQA 960 WVEPSPAASH VTKHKAVSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV 1020 CLYFRGYPYT GMVSPFTWEK LDYATI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 116 | 199 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 835 | 840 | RAVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372667.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 | ||||
TrEMBL | F6I6X1 | 0.0 | F6I6X1_VITVI; Uncharacterized protein | ||||
STRING | XP_009372667.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0013s0266.1.p |