PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0256.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 268aa    MW: 30621.4 Da    PI: 7.7082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-17855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed ll+++++++G g W++++++ g++R++k+c++rw++yl
  Kalax.0013s0256.1.p  8 KGAWTEDEDILLKECIEKYGAGKWHKVPARSGLNRCRKSCRLRWLNYL 55
                         79********************************************97 PP
2Myb_DNA-binding47.54.2e-1561106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++ ++E +l+ +++++lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0013s0256.1.p  61 RGPFEEDEVDLIRRLHQLLGNR-WSLIAGRLP-GRTANDIKNYWNTHL 106
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.64359IPR017930Myb domain
SuperFamilySSF466892.93E-285102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-21558IPR009057Homeodomain-like
SMARTSM007179.7E-15757IPR001005SANT/Myb domain
PfamPF002492.1E-16855IPR001005SANT/Myb domain
CDDcd001671.64E-101055No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2459110IPR009057Homeodomain-like
SMARTSM007179.8E-1560108IPR001005SANT/Myb domain
PROSITE profilePS5129419.96460110IPR017930Myb domain
PfamPF002494.4E-1461106IPR001005SANT/Myb domain
CDDcd001672.83E-963106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSHIRVRKGA WTEDEDILLK ECIEKYGAGK WHKVPARSGL NRCRKSCRLR WLNYLQPDIK  60
RGPFEEDEVD LIRRLHQLLG NRWSLIAGRL PGRTANDIKN YWNTHLRKKW QPKASANCGS  120
SHKAHDLGTN TTPNKVEILK PRPWKFSKIS IASHSQQNEL SVQYSFKYDK GNDGSENSPI  180
KEMHPSSRSS ELHEDDLPTS SWWERLLQDE AAILSEETAS GSVEVRQKDE EVPPPAAAKE  240
SGEEGGVLSL HHHEFDIELF WDLLAKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2281094104MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-22810927127MYB TRANSFORMING PROTEIN
1mse_C2e-2281094104C-Myb DNA-Binding Domain
1msf_C2e-2281094104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FNV91e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3G8FWU76e-69A0A3G8FWU7_9SOLA; MYB transcription factor AN2
TrEMBLA0A3G8FWW86e-69A0A3G8FWW8_9SOLA; MYB transcription factor AN2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]