PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0245.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 285aa    MW: 30701.6 Da    PI: 6.5615
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0245.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.5e-06434535
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ +++  ++ +C  ++  lC++C    H+
  Kalax.0013s0245.2.p  4 QCDVCNKDGASVYCPADEAALCASCDYGVHH 34
                         7******99*****************99974 PP
2zf-B_box27.56.4e-095697438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                         ++C+ +++k++ lfC++++  lC dC  ++H         H+
  Kalax.0013s0245.2.p 56 PNCDICQDKRAFLFCRQDRAILCSDCDASIHAAnqltqrhHR 97
                         79*****************************65667777555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000211.78E-4333No hitNo description
SMARTSM003367.6E-5447IPR000315B-box-type zinc finger
SMARTSM003361.6E-1253100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.11153100IPR000315B-box-type zinc finger
PfamPF006435.2E-75695IPR000315B-box-type zinc finger
CDDcd000212.55E-958100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKIQCDVCNK DGASVYCPAD EAALCASCDY GVHHANKLAS NHYRFNLLTP SAKDTPNCDI  60
CQDKRAFLFC RQDRAILCSD CDASIHAANQ LTQRHHRFLL TGVKLSAKTN LYAAAGSDPV  120
PDFESHPSAA KKNLAASQPA AHKTCSCCDQ LMGDPCSTSS ISEYLMETLP GWRVDDLLDS  180
SSAPYAFSKY DDGLLLPFMD ADVLGHSDLM GSLFPGTWAS QVPSISPPSP QVPHYPSSYA  240
PVACKETTSM KATDSRKSLI DDGFTVPQMI SPHSSVGTKR SRLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884802.12e-86B-box zinc finger protein 21-like
SwissprotQ9LQZ74e-69BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A061FC449e-83A0A061FC44_THECC; Salt tolerance 2, putative isoform 1
TrEMBLB9GRG88e-83B9GRG8_POPTR; Uncharacterized protein
STRINGEOY149101e-83(Theobroma cacao)
STRINGPOPTR_0002s02970.11e-83(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-69salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]