PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0013s0245.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 286aa MW: 30829.8 Da PI: 6.5615 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.5e-06 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +++ ++ +C ++ lC++C H+ Kalax.0013s0245.1.p 4 QCDVCNKDGASVYCPADEAALCASCDYGVHH 34 7******99*****************99974 PP | |||||||
2 | zf-B_box | 27.5 | 6.4e-09 | 56 | 97 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++C+ +++k++ lfC++++ lC dC ++H H+ Kalax.0013s0245.1.p 56 PNCDICQDKRAFLFCRQDRAILCSDCDASIHAAnqltqrhHR 97 79*****************************65667777555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.196 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.79E-4 | 3 | 33 | No hit | No description |
SMART | SM00336 | 7.6E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-12 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.111 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.2E-7 | 56 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.58E-9 | 58 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKIQCDVCNK DGASVYCPAD EAALCASCDY GVHHANKLAS NHYRFNLLTP SAKDTPNCDI 60 CQDKRAFLFC RQDRAILCSD CDASIHAANQ LTQRHHRFLL TGVKLSAKTN LYAAAGSDPV 120 PDFESHPSAA KKNLAASQPA AHKTCSCCDQ LMGDPCSTSS ISEYLMETLP GWRVDDLLDS 180 SSAPYAFSKQ YDDGLLLPFM DADVLGHSDL MGSLFPGTWA SQVPSISPPS PQVPHYPSSY 240 APVACKETTS MKATDSRKSL IDDGFTVPQM ISPHSSVGTK RSRLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884802.1 | 5e-85 | B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-70 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A061FC44 | 5e-81 | A0A061FC44_THECC; Salt tolerance 2, putative isoform 1 | ||||
STRING | EOY14910 | 8e-82 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-70 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0013s0245.1.p |