PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0013s0193.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 233aa MW: 25637.8 Da PI: 10.1564 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.8 | 5.1e-33 | 14 | 68 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH++Fv+av++LGG+ekAtPk++++lm++kgLtl+h+kSHLQkYR+ Kalax.0013s0193.1.p 14 KPRLRWTPQLHSCFVDAVAKLGGPEKATPKAVMRLMGLKGLTLYHLKSHLQKYRI 68 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.59 | 11 | 71 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 12 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-15 | 13 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-23 | 14 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-9 | 16 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-19 | 119 | 156 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MERGYVGGKA AEPKPRLRWT PQLHSCFVDA VAKLGGPEKA TPKAVMRLMG LKGLTLYHLK 60 SHLQKYRIGQ QARKSSSEQS KDSSGDSRKM QASGATATSS GACSGQGDAD AALIYAASSQ 120 TEAQKRLHDQ LEVQRRLQMR IEAQGKYLQS VLEKARTHLT LRTGSSPAAG SDQARAQQLT 180 GFNLALDDDV NGVQKDTDAN FRSKDFFQSF LQNQHREMQE DEKPDVKQLR LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 14 | 70 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002264257.2 | 3e-63 | PREDICTED: myb family transcription factor PHL11 | ||||
Refseq | XP_008800016.1 | 4e-63 | myb family transcription factor PHL11 | ||||
Swissprot | Q94A57 | 1e-54 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A2H3YKB2 | 9e-62 | A0A2H3YKB2_PHODC; myb family transcription factor PHL11 | ||||
TrEMBL | D7U3R9 | 7e-62 | D7U3R9_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0033g00300.t01 | 1e-62 | (Vitis vinifera) | ||||
STRING | XP_008800016.1 | 2e-62 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0013s0193.1.p |
Publications ? help Back to Top | |||
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